Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01434 ATGGAAGGTTCAAAGCCTCCTCCTATGTTGGAGAGAAGGGCAAGGCCTCAGAAGGATCAAGCTTTGAACTGCCCTAGGTGCAATTCAACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCTCAGCCAAGGTACTTTTGTAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTTTAAGAAATGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCAATCCCGTCGGCACCATCATCATCATCAGCATCAGCACCAACAAAGAAGCTTCCTGATCTCACATCACCAAATTTCCCTCAATCTGCTTCTCAGGAGCCTAAGATCCACCAAGGCCAAGACCTCAACTTAGCATATCCACCAGCTGAGGACTATAGCACTGTGTCCAAGTTCATTGAGGTTCCTTACAGCACTGAATTAGACAAGGGTAGTGGTCTTCAAAACCCTACTTCCTCATCAACATCTGCACCTTCTCAGTTGTCTGCCATGGAGCTTCTCAAAACTGGGATTGCCTCCTCAAGGGGTTTGAACTCCTTCATGCCAATGTACAATTCAACTGGGTTTCCCTTGCAAGACTTTAAGCCACCACCTGGTCTTAACTTCAGCCTAGAGGGGTTTGAAAATGGTTATGGGGGTCTTCAGGGAATTCAAGCGGGTGGTCCTACTGGTGCAAGGATCTTGTTTCCTGTGGAGGATTTGAAGCAGCAGGTTCCAAGCACAAATGAGTTCGATCAGCAGAATAGAAGTCAAGGGGATTCAACTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 810 0.4654 MEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSIPSAPSSSSASAPTKKLPDLTSPNFPQSASQEPKIHQGQDLNLAYPPAEDYSTVSKFIEVPYSTELDKGSGLQNPTSSSTSAPSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLQDFKPPPGLNFSLEGFENGYGGLQGIQAGGPTGARILFPVEDLKQQVPSTNEFDQQNRSQGDSTGYWNGMLGGGSW 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01434 269 Pfam Dof domain, zinc finger 19 76 IPR003851 GO:0003677|GO:0006355
Pumo10g01434 269 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
Pumo10g01434 269 MobiDBLite consensus disorder prediction 63 113 - -
Pumo10g01434 269 MobiDBLite consensus disorder prediction 76 113 - -
Pumo10g01434 269 MobiDBLite consensus disorder prediction 1 23 - -
Pumo10g01434 269 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 158 IPR045174 GO:0003700|GO:0006355
Pumo10g01434 269 MobiDBLite consensus disorder prediction 242 269 - -
Pumo10g01434 269 MobiDBLite consensus disorder prediction 1 19 - -
Pumo10g01434 269 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
Pumo10g01434 269 MobiDBLite consensus disorder prediction 242 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01434 Pumo-Chr10 19177207 19179425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01434 9 269 C2C2-Dof Transcription Factor Family AT3G61850 44.561 1.05e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo10g01434 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01434 - - gmx:778114 449.899