Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01433 ATGGGTAGCTTCAGCGAAGACGATGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTGTGTCCGTTGCAGATGATGAAGGGGTATCCAATGGTTTTGATTATGAAGTGTGGATTCGGAGTCCAAGGAGTGTGAGGGAGCGTAGGGGCAAGTTTATGAAGAGGATGGGACTGAGTAGTGTGGATTTGGTTGCCCTTGAAAATGAAAATTCAGTAGATGTGGCTAGTGTTGAGTGTGAAGAGGTGATGATGGATAGAGTAAATGTTAACAGTGGGGCTGTGACCCGAAATTGTGTTATGGAAGAGGAATTCTGTTCAAGCAGGACATCAATGTCTTGTTGGCATAGTGAGAATTCTTCAGAGGAGTTGGGTTTAGTGGATAACTCGCCGTGTCAAGATGGGAATTTGGAGGGTAATGTGGATCAGGAGGGGCTGCAGTGTAGGGAGATGAGTGATGGAAGAGATCTGGATTCAGATCAGTTGGTGGTTGTGCAGGAACCTAAGGATTTGGAGAATGCCTTTAGGGAAACAGATGCTAATGCTTCTGTCGGGAGGATGAGCAAGTATAGAAAGGGTTGGTTCAGAAGATTGCGGTCGATAACGTGCATGGTTGATAGGCAAGAGGAAGGTGATAATGGGAGAGAAGAAGGTATTGGTGAAATGTCAGGGTGTAGGCTTCAGAAAGTTAAGGTCCGTCAGTCGAAGAAGCAAATGAAGGAACTTTCGGCTCTTTACATGAGGCAAGATATCCAAGCGCATGAAGGTTCAATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAGTTGACATTCCAGAAATTGATCCATCTTGCATTTATTTTACTGTGAATAATCTCTCTGAATTGACACCGCTGTTTATGGATAAAGAAAAATTAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCAGCTTGCATTGTTTTTCCTCCTAAGATCTTTCGGTTGTTGGAGAAACCATTGCATGAGTTTCGGGGGCATCAAGGAGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGTCTATGGCGAGTGAATCATGACCATTGCCTGAAAGTCTTCTCACACAATAATTACGTGACGTGCATACAATTCAATCCTGTGGATGATAATTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGATTGATATCAAAGATATAGTGACTGCAGTATGCTATCGGCCTGATGGGCAGGGAGGGATCATTGGCTCCTTGGTTGGCAATTGTCGGTTTTATAATGTATCAGAGAATCGCTTGCAATTAGATTCCCAACTATGCTTAATTAGCAAAAAGAAACTTCCTGGCAGAGGGATAACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACAGGGAGCCCAATGTGTGCATCATTTACTTCTGATGGGAAACATATTATATCAGCATGTGAGGACTCTAACGTATGCCTATGGAATGTTAGTCAGGAAGAGTCTAATCCCGTGAAAGCTAAGAAGATTATGTCTTGTGAGCGGTTTTTCTCAAATGCATCCGTAGCAGTACCTTGGCATGGTTTGAAATCTCAAAATATTGAAATTGAACATCAACTGGATGTCTTGGATAAAAGATCATCTCAAGTTATACAACTCAGTCCACCTGCTTCGTTCTCTCTGAGTCAAGAGTTCTTCTTGGAGTCTTTTCCAAAGGGATCTGCAACTTGGCCAGAGGAGAACCTTCCTGTTTCAAGCTCCAAGCCTAAAACATCAGTGATGCGTAAATCCGAATACAAGTTCTTGAAATCTTCTTGCAAGAGTACCTCCTCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGCTGGGATGGTAGGATAAAATCATTCCACAATTATGGGCTACCTATACCCGTTTGA 2112 0.4276 MGSFSEDDECRFFDAQEDVVSVADDEGVSNGFDYEVWIRSPRSVRERRGKFMKRMGLSSVDLVALENENSVDVASVECEEVMMDRVNVNSGAVTRNCVMEEEFCSSRTSMSCWHSENSSEELGLVDNSPCQDGNLEGNVDQEGLQCREMSDGRDLDSDQLVVVQEPKDLENAFRETDANASVGRMSKYRKGWFRRLRSITCMVDRQEEGDNGREEGIGEMSGCRLQKVKVRQSKKQMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFMDKEKLSKLKSLKKTSDSACIVFPPKIFRLLEKPLHEFRGHQGEVLDLSWSNNNYLLSSSVDKTVRLWRVNHDHCLKVFSHNNYVTCIQFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLVGNCRFYNVSENRLQLDSQLCLISKKKLPGRGITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPMCASFTSDGKHIISACEDSNVCLWNVSQEESNPVKAKKIMSCERFFSNASVAVPWHGLKSQNIEIEHQLDVLDKRSSQVIQLSPPASFSLSQEFFLESFPKGSATWPEENLPVSSSKPKTSVMRKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIPV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01433 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 282 IPR001680 GO:0005515
Pumo10g01433 703 SUPERFAMILY WD40 repeat-like 244 693 IPR036322 GO:0005515
Pumo10g01433 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 393 IPR001680 GO:0005515
Pumo10g01433 703 Gene3D - 232 585 IPR015943 GO:0005515
Pumo10g01433 703 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 425 IPR001680 GO:0005515
Pumo10g01433 703 Pfam WD domain, G-beta repeat 348 383 IPR001680 GO:0005515
Pumo10g01433 703 Pfam WD domain, G-beta repeat 390 425 IPR001680 GO:0005515
Pumo10g01433 703 Pfam WD domain, G-beta repeat 250 280 IPR001680 GO:0005515
Pumo10g01433 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 282 - -
Pumo10g01433 703 PANTHER WD REPEAT DOMAIN 44 5 700 IPR040324 -
Pumo10g01433 703 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Pumo10g01433 703 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Pumo10g01433 703 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Pumo10g01433 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 386 - -
Pumo10g01433 703 SMART WD40_4 429 467 IPR001680 GO:0005515
Pumo10g01433 703 SMART WD40_4 387 426 IPR001680 GO:0005515
Pumo10g01433 703 SMART WD40_4 242 281 IPR001680 GO:0005515
Pumo10g01433 703 SMART WD40_4 346 384 IPR001680 GO:0005515
Pumo10g01433 703 SMART WD40_4 478 518 IPR001680 GO:0005515
Pumo10g01433 703 SMART WD40_4 658 695 IPR001680 GO:0005515
Pumo10g01433 703 SMART WD40_4 519 559 IPR001680 GO:0005515
Pumo10g01433 703 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01433 Pumo-Chr10 19119155 19123943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01433 249 417 U-box Gene Family AT2G33340 23.350 2.16e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01433 - - gmx:100817209 1282.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01433 10 19119155 19123943 Pumo10g01433 10 19119155 19123943 ECH
Pumo6g00690 6 8642274 8647935 Pumo10g01433 10 19119155 19123943 PCT