Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01425 ATGGCCTTGTCAAGTCCACACATACAAAGATTCCTCTTATGCAAACTACATAGCCGCTCCACCGCCAAGAGCACTCACAGAAACAGCTTTACCACCACGAGCAGGGGCCGGTGCTGCTCTGCCATAGCCATTGATGCTCCATCGTCTTTGACTGAGGTGCCCGGTATAAGATGGGGCTCCATAGCCTTGCAGGGTCTCCGTGAAGAGATGGAGGATGACATTATAGTTCGACCCGATGGCCTTAAGGGCTTCTCTTTCGCGGCTGTGTTTGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGTGCCAACTACAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGGTTACTATTAGTCGAGAAAGATTTCAAAGCCATTAAAGGGGCATTACAGGAGGCATTTCTCAAGGCTGACGCGAGGTTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACAGCAACTGCCGTGTTCATTGGAGATGATGAGCTGCTAATTTCACATATTGGTGATTCATCTGTGGTTCTATGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCATATGGGAGCAACAAGACTTCTCTTGATGAAATTAGAAGAATCAGAGAAGCAGGTGGATGGATTAGCAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACGTGCGATTCAAAACAAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAAATGGTCAACAAAGTTCATTTCTCGTGTACAGCTCAACAATGACTTGGTTGTTGCAAACCCTGATATTTATCAAGTAGCTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTGAGGGATCAACTACGAAAACACGGAAACATTCAGCTAGCATGTGAAGCGCTTGCAGAAACCGCTTTGGACCGACGTACACAGGATAATGTCAGCATTATAATTGCAGATTTAGGGAGGACAGACTGGCAGAATGCGCCACTGGAACAACAAAATACTGTACTTGAGCTGGTCCAAGCTCTTGCTACCATTGGAATTGTGTCCATTGGAATCTGGTTTTCATCACAGTTTTCTTTATAG 1173 0.4544 MALSSPHIQRFLLCKLHSRSTAKSTHRNSFTTTSRGRCCSAIAIDAPSSLTEVPGIRWGSIALQGLREEMEDDIIVRPDGLKGFSFAAVFDGHGGFSSVEFLSANYRDELYKECVEALQGGLLLVEKDFKAIKGALQEAFLKADARLLKRLEMNGEEDESGATATAVFIGDDELLISHIGDSSVVLCRSGKAEVLTSPHRPYGSNKTSLDEIRRIREAGGWISNGRICGDIAVSRAFGDVRFKTKKNEMLQKGVQEGKWSTKFISRVQLNNDLVVANPDIYQVALGSDAEFVVLASDGLWDYMSSSEAVSLVRDQLRKHGNIQLACEALAETALDRRTQDNVSIIIADLGRTDWQNAPLEQQNTVLELVQALATIGIVSIGIWFSSQFSL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01425 390 SMART PP2C_4 47 347 IPR001932 -
Pumo10g01425 390 FunFam Protein phosphatase 2C 57 56 356 - -
Pumo10g01425 390 CDD PP2Cc 56 349 IPR001932 -
Pumo10g01425 390 PANTHER PROTEIN PHOSPHATASE 2C 34 347 IPR015655 GO:0004722|GO:0006470
Pumo10g01425 390 Pfam Protein phosphatase 2C 59 342 IPR001932 -
Pumo10g01425 390 Gene3D - 56 356 IPR036457 -
Pumo10g01425 390 SUPERFAMILY PP2C-like 49 350 IPR036457 -
Pumo10g01425 390 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Pumo10g01425 390 ProSiteProfiles PPM-type phosphatase domain profile. 57 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01425 Pumo-Chr10 19002638 19007001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01425 1 326 PP2C-type Phosphatase Gene Family AT4G27800 60.597 4.91e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01425 K04457 - vra:106776113 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01425 10 19002638 19007001 Pumo10g01425 10 19002638 19007001 ECH
Pumo10g01425 10 19002638 19007001 Pumo9g00193 9 2758682 2760711 PCT