Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01417 ATGGACTTTGTCTCCGACCACGATTTCCCCAACCTTGAGATCATTCCTCATGGCCTCAACTCCTGTTTTTGCTCTCCTCATCTAAACGACACTCACAAAATAATGGAGATTTCACCATTAGAGGGTTTCTGCGAGCTTGATTGGACACACCATTTGCCATATTCAAGCAACCAACTTTGCTTCAATGAGCTCCCGGATTTGGAGAATTTGGACTTCGATTTCAGCCTCCCACCCCTTGGTGAACATTTGGAGGAGGAGCAGGACCAAAAGCCCTTGAACATTGTTGTTCCCCAAGGGTTTCATCATTGCAATCAGGAAAAAGAAAAGGTTTTTGGGGATGCTTCATTGGCCATTGAAAATGTTTCTGCCACTTGTGTGAAGAAAGAGCAAGTGCAGAATATTGATCAGAGGCCATTGCCACCAGTGCCTCGTGCTAGTAGCAGCAGTAGTACAAAGAAGAGGTCATGTGCCTTGGAATTTGAGGAAATAAAGAATCATTTTGATGTTCCAATAAATGAAGCTGCCAAGCAAATGAATGTGGGGTTAACCATGCTGAAGAGAAGGTGCAGGGAGCTCAACATCATGAGATGGCCTCATAGGAAAATCAAGAGCTTGCAATTTCTCATCGACAATGTTAAGGAATTGGGTTTGGCAGACGAGGTCCCCATGTTGGAGAAGCATAAAAGGTTGTTGGAAAAATTACCAGGACTGGAACTAAGTGAAGAAGCCAAGAAGCTGAGGCAAGCTTGCTTTAAAGCTAATTACAAGAGGAGAAGGTGTATGGCACTCCAAGCTTGA 798 0.4411 MDFVSDHDFPNLEIIPHGLNSCFCSPHLNDTHKIMEISPLEGFCELDWTHHLPYSSNQLCFNELPDLENLDFDFSLPPLGEHLEEEQDQKPLNIVVPQGFHHCNQEKEKVFGDASLAIENVSATCVKKEQVQNIDQRPLPPVPRASSSSSTKKRSCALEFEEIKNHFDVPINEAAKQMNVGLTMLKRRCRELNIMRWPHRKIKSLQFLIDNVKELGLADEVPMLEKHKRLLEKLPGLELSEEAKKLRQACFKANYKRRRCMALQA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01417 265 ProSiteProfiles RWP-RK domain profile. 147 227 IPR003035 -
Pumo10g01417 265 PANTHER PROTEIN RKD4 132 263 IPR044607 GO:0003700
Pumo10g01417 265 Pfam RWP-RK domain 158 205 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01417 Pumo-Chr10 18917538 18918839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01417 158 262 AtRKD Transcription Factor Family AT5G53040 61.905 1.27e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo10g01417 RWP-RK 7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01417 - - gmx:102667394 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01417 10 18917538 18918839 Pumo10g01417 10 18917538 18918839 ECH