Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01408 ATGGACTTGGACAGCGTTGAGTGTGTGTCATCCTCGGATGGCATGGACGAGGATGAGATCCACGCCAACCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACTAATAACATTAATTCTGTGGGCCCCACCGCCATTGCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGCCCTGTATGTACTAATTCAATGTACCCTCCAATTCATCAGTGTCACAATGGCCACACTCTGTGTTCCACGTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGACCATATAGTTGCCCTTATGCTGGATCGGAGTGTTCTGTTGTTGGGGATATTCCTTTCCTTGTTGCTCATTTGAGGGATGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTATACATGGCATTCCTTCGTTTTATGGGTGATGAGAACGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGGAAACTCATTTGGGAGGGTACACCGCGAAGTGTTCGGGATAGCCACCGTAAGGTTAGGGATAGCCATGATGGGCTCATTATTCAAAGAAATATGGCCCTATTTTTCTCTGGTGGGGATAGAAAGGAGCTGAAACTCAGAGTCACAGGAAGAATATGGAAGGAACAACAGAATTCAGATGCTGGGGTGTGCATGCCAAATCTCTGTAGTTGA 975 0.4605 MDLDSVECVSSSDGMDEDEIHANHHHSEFSSTKPRNGGTNNINSVGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01408 324 CDD RING-HC_SIAHs 60 98 - -
Pumo10g01408 324 FunFam E3 ubiquitin-protein ligase SINAT3 114 170 - -
Pumo10g01408 324 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Pumo10g01408 324 CDD Sina 176 304 - -
Pumo10g01408 324 FunFam E3 ubiquitin-protein ligase SINAT3 11 113 - -
Pumo10g01408 324 FunFam E3 ubiquitin-protein ligase SINAT5-like 171 303 - -
Pumo10g01408 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 168 IPR013083 -
Pumo10g01408 324 SUPERFAMILY TRAF domain-like 115 307 - -
Pumo10g01408 324 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Pumo10g01408 324 MobiDBLite consensus disorder prediction 24 46 - -
Pumo10g01408 324 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 309 - -
Pumo10g01408 324 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Pumo10g01408 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 114 IPR013083 -
Pumo10g01408 324 MobiDBLite consensus disorder prediction 32 46 - -
Pumo10g01408 324 SUPERFAMILY RING/U-box 54 102 - -
Pumo10g01408 324 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01408 Pumo-Chr10 18812648 18816305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01408 30 310 C3H Transcription Factor Family AT2G41980 76.157 1.83e-164 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01408 K04506 - gmx:100810573 678.322