Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01403 ATGGAGTACGGAAGGTTGGGACCCTCTGATCCTGGTGGCTCCTCGCGCCACAACGCTCCGAGATCTTCTTCCGGGAGGAAGAAGATTGTGCTGCTGTCACTTTTAGGTGTTGTATTAATAGCCGCGTCTGCAGTTACCGTAGTTGCTGTCCGCTCTCGCACTTCTGAAAGTGCGAGAGCGGACAGGTCTGGGCTTGTCGGGAAGCCCACGCAGACGATTTCACGCACGTGCAGCAAGACACGGTTTCCGACGCTGTGCGTGAATTCGCTGGTGGATTTTCCGGGATCCGCGGCGGCGTCGGAGAAGGACCTCGTCCACATTTCCTTCAACGTGACGCTGCAGCACTTCTCGAAGGCGCTGTACTCCTCCGCGGCCATGTCCTACGCCGCCATGGATCCCCGCGTCCGCGCCGCCTACCACGACTGCCTCGAGCTCCTCGACGACTCCGTGGACGCCCTCGCCCGCTCCCTCAACAGCGTCTCCCTCGGCGCCGTCGGCTCCGCCAATGACGACGTGCTGACGTGGCTCAGCGCCGCCCTCACCAACCAGGACACCTGTGCGGAGGGCTTCGCCGACGCCGCCGGCCCCGTCAAGGACCAGATGGCCAACAACCTCAAGGACCTGTCTGAGCTCGTCAGCAATTGTCTCGCGATATTCTCCGGTGCCGGCGCCGGGGACGACTTCTCCGGCGTCCCCATTCAGAATAGGAGGCGCTTAATGGCAATGCGAGACGATAATTTCCCGACATGGTTGAATCGGCGAGATAGGAGATTGCTGAGCTTGCCTGTGTCGCAGATACAAGCCGATATTGTGGTTTCCGGTGACGGTAACGGAACCGTTAAGACCATCGCCGAGGCCATTAAGAAGGTGCCGGAATATAGTTCACGCCGCATCATAATCTACGTCAGGGCAGGAAGGTATGAAGAGGACAATTTAAAGGTGGGGAGGAAGAAAACAAATGTGATGTTCATAGGAGACGGGAAGGGCAAGACCGTCATCACGGGCGGAAAAAATTATTACCAGAACCTCACCACATTTCACACTGCTTCCTTCGCTGCTAGTGGTTCTGGTTTCATCGCAAAAGACATGACGTTCGAGAACTACGCCGGGCCGGGGAGGCACCAGGCGGTGGCCCTCCGTGTCGGAGCAGACCACGCGGTGGTGTACCGCTGCAACATCATCGGATACCAAGACACAATGTATGTCCACTCGAACCGTCAATTTTACCGAGAATGCGACATTTACGGAACCGTGGACTTCATATTCGGCAACGCTGCAGTGGTGTTCCAAAACTGCACCATGTGGGCCCGAAAGCCCATGCCCCAACAGAAGAACACCATCACGGCCCAAAACCGGAAAGACCCGAATCAGAACACGGGCATTTCGATCCACAATTGTAGGATCATGGCCACGCCGGATCTGGAAGCATCCAAGGGTAGCTACCCCACTTATCTGGGCCGTCCCTGGAAACTTTACGCTAGAACCGTCTACATGCTATCCTACATAGGGGATCACGTGCATCCACGTGGGTGGCTCGAGTGGAACACTTCGTCGTTTGCCTTAGACACGTTGTACTATGGTGAATACATGAATTATGGGCCGGGTGCGGCTGTGGGCCAACGCGTTAATTGGGCCGGGTATCGGGTCATCACTTCGACGGTGGAAGCGTCTAGATTCACCGTGGGCCAATTCATATCAGGCTCGTCCTGGTTGCCCTCTACCGGTGTTGCATTCATTGCTGGGTTATCAACCTGA 1755 0.5658 MEYGRLGPSDPGGSSRHNAPRSSSGRKKIVLLSLLGVVLIAASAVTVVAVRSRTSESARADRSGLVGKPTQTISRTCSKTRFPTLCVNSLVDFPGSAAASEKDLVHISFNVTLQHFSKALYSSAAMSYAAMDPRVRAAYHDCLELLDDSVDALARSLNSVSLGAVGSANDDVLTWLSAALTNQDTCAEGFADAAGPVKDQMANNLKDLSELVSNCLAIFSGAGAGDDFSGVPIQNRRRLMAMRDDNFPTWLNRRDRRLLSLPVSQIQADIVVSGDGNGTVKTIAEAIKKVPEYSSRRIIIYVRAGRYEEDNLKVGRKKTNVMFIGDGKGKTVITGGKNYYQNLTTFHTASFAASGSGFIAKDMTFENYAGPGRHQAVALRVGADHAVVYRCNIIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCTMWARKPMPQQKNTITAQNRKDPNQNTGISIHNCRIMATPDLEASKGSYPTYLGRPWKLYARTVYMLSYIGDHVHPRGWLEWNTSSFALDTLYYGEYMNYGPGAAVGQRVNWAGYRVITSTVEASRFTVGQFISGSSWLPSTGVAFIAGLST 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01403 584 PANTHER PECTINESTERASE 42 572 - -
Pumo10g01403 584 Pfam Pectinesterase 269 567 IPR000070 GO:0030599|GO:0042545
Pumo10g01403 584 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g01403 584 Gene3D - 263 582 IPR012334 -
Pumo10g01403 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 221 IPR035513 -
Pumo10g01403 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 220 IPR035513 -
Pumo10g01403 584 NCBIfam pectinesterase inhibitor domain 60 220 IPR006501 GO:0004857
Pumo10g01403 584 Pfam Plant invertase/pectin methylesterase inhibitor 72 218 IPR006501 GO:0004857
Pumo10g01403 584 SMART PMEI_2 68 218 IPR006501 GO:0004857
Pumo10g01403 584 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Pumo10g01403 584 FunFam Pectinesterase 69 222 - -
Pumo10g01403 584 SUPERFAMILY Pectin lyase-like 265 581 IPR011050 -
Pumo10g01403 584 FunFam Pectinesterase 263 582 - -
Pumo10g01403 584 CDD PMEI-like_3 77 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01403 Pumo-Chr10 18744605 18749357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01403 1 583 Carbohydrate Esterase AT5G53370 65.144 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01403 - - gmx:100808236 1017.3