Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01399 ATGTATGCAGAGACTGGTCTTCTCTTCTCATATTTGCACAACATCTCTCAAGAGCTTCATCAGCTTGAGGAGTACTGCAAAACCCAAAAGTTCAATGCTTCAATGGATGACCTTGTTCAGTCTTCTGCCATGTCAGAATATGATTTAGCAGCAGAGGGAGATCTGTTCAAAGCTCCTGAACCTATTATTGAAGAACCAATCATGGACCTGGATCCCATGACAGCCGCCATCTCGATGATATCTTGTGGGGAAGATGTCTCCTCACAGGGACTAAAATCCACTGATATTGATATTCTTCAAAATGATCAGTTTCTGAGTGAGGTATTCTATGAATGCAAAAAGGATCTGTTAGAGAAGGCAGCAATAGAGACACCACTCTCTGAGATTCTGGAAATCAAGGTTCCTCTTCTGAACATTGATGAGAACTCAATTCAAGAAAACAAGCCTCTTTCTGACATGCAATTAGCAAAGAGTGTCAGCTCAGGAAGTTTGAGCTCAATGGACTGGATGCTTGGAGCTGCAATGAAGCCTGCTTTCTTTGATATCCCTGCAATAGATTTCAATGCAGATTATGGCATGCGGAGATCATTTAGCGAAGGAGATATAAAGACTCTTGGTAATGGTAACATGAACGTCGTCCAATCACCCCTTGAGAGGCCCTTTTTTATCAGCAACTGCACCAGCGAGGAACGCTTCCAAAAGCTCTCCAGATACAGGAATAAGAGGACAAAGAGGAATTTTGGGAGGAAAATAAAGTATGCTTGCAGGAAGGCTCTTGCTGACAGTCAGCCAAGAATCCGTGGAAGATTTGCAAGGACTGAAGAATCTGATGTGAAGAGGGAATGA 846 0.4279 MYAETGLLFSYLHNISQELHQLEEYCKTQKFNASMDDLVQSSAMSEYDLAAEGDLFKAPEPIIEEPIMDLDPMTAAISMISCGEDVSSQGLKSTDIDILQNDQFLSEVFYECKKDLLEKAAIETPLSEILEIKVPLLNIDENSIQENKPLSDMQLAKSVSSGSLSSMDWMLGAAMKPAFFDIPAIDFNADYGMRRSFSEGDIKTLGNGNMNVVQSPLERPFFISNCTSEERFQKLSRYRNKRTKRNFGRKIKYACRKALADSQPRIRGRFARTEESDVKRE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01399 281 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
Pumo10g01399 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 148 274 IPR045281 GO:0009909
Pumo10g01399 281 Pfam CCT motif 231 273 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01399 Pumo-Chr10 18623295 18628480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01399 227 277 C2C2-CO-like Transcription Factor Family AT5G57660 49.020 2.73e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo10g01399 CCT 3.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01399 - - gmx:100814332 510.375