Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo10g01395 | ATGTCGTCGACGGTGCTGGAAGTGACGCGGGCATCGCACGAGGAAGTGGAGCGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGAGCCTGGCTCAAACAAAGAGCGTTTGTATCAGAGTCACCGCGTGCGAAACATGATCGACACCATTACCTCCACCACTGAAAAGCTTATTGGGATATATGAAGATAACGACAATGCGAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACTGCCACTGGAATTAACGTTTTCAGTGCCTTTTATGATAGACTAAAGGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGCGTTGTTGACGCCAATGACGATTATGAAGCACTTCTCAAAGAGGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTCTTGGTCGATACTTAGACATGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGGGAGCCAATTGAGTATTCTGCATATCTTGATGTTTTCTCAGACATGGATAAGATTCCCCGCAAAATGAAAATGACCAGGCAGTACCGAGAATATATGGCAAATCTTTTGGAGTATCTGTTATACTTTTTCCAGCGGACAGAGCCCCTGCAAGATCTTGATCGAATTTTAGCAAAGGTAACAACTGAATTTGAAGAAAATTGGGCTGCTGGAAAGGTACGGGGATGGGAAAATGATAATCAGGAGAATGGGCATGTACCTGCTGAGCATGCTACCATTGATCTCGATTATTATAGTACAGTTGAAGAGTTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTGGCTGCATTGGGGCTTAAGACTGGTGGTACTGTTCAGCAACGTGCAGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGACAGGAAGCATTTTGCTAAGGGGGCACGTGGTGTAGAAAAGAACGGGGTTGCTGCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTGATGGAAGCCAAAATGACAAAGCTATGTGATTTGTTAGAGGAGACAATTGCTCGAACAAAGGACAATGTTGTAAAGAAGCAAGCCCTAACATATGAGGAAATGGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGTGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGCGGGAACTACAGTTATTGGGGGCGTCGGGCTTTCGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAATTTCAACGAAATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGACCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACGCCGACTTACAGCGCCAGGGACTGATATGA | 1530 | 0.4444 | MSSTVLEVTRASHEEVERLERLIVKELQNEPGSNKERLYQSHRVRNMIDTITSTTEKLIGIYEDNDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYEALLKEEPQIEFSGEEALGRYLDMHELYYQYVNSKFGEPIEYSAYLDVFSDMDKIPRKMKMTRQYREYMANLLEYLLYFFQRTEPLQDLDRILAKVTTEFEENWAAGKVRGWENDNQENGHVPAEHATIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGARGVEKNGVAAVPQEDGNSKEIALMEAKMTKLCDLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYADLQRQGLI | 509 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo10g01395 | 509 | MobiDBLite | consensus disorder prediction | 363 | 382 | - | - | |
Pumo10g01395 | 509 | Pfam | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 127 | 176 | IPR031774 | - | |
Pumo10g01395 | 509 | Pfam | SF3a60/Prp9 C-terminal | 390 | 509 | IPR024598 | GO:0000398|GO:0003723|GO:0005681 | |
Pumo10g01395 | 509 | Pfam | Splicing factor SF3a60 binding domain | 81 | 105 | IPR021966 | - | |
Pumo10g01395 | 509 | Pfam | Replication stress response SDE2 C-terminal | 223 | 304 | IPR025086 | - | |
Pumo10g01395 | 509 | Coils | Coil | 353 | 380 | - | - | |
Pumo10g01395 | 509 | ProSiteProfiles | Zinc finger matrin-type profile. | 414 | 445 | IPR000690 | GO:0003676|GO:0005634|GO:0008270 | |
Pumo10g01395 | 509 | MobiDBLite | consensus disorder prediction | 362 | 383 | - | - | |
Pumo10g01395 | 509 | PANTHER | SPLICING FACTOR SF3A-RELATED | 241 | 312 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo10g01395 | Pumo-Chr10 | 18561320 | 18567985 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo10g01395 | 1 | 509 | C2H2 Transcription Factor Family | AT5G06160 | 74.853 | 0.0 | 758 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo10g01395 | K12827 | - | gmx:100815393 | 972.23 |