Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01392 ATGACGCACAGTAAAACCCGTCCCCAGTGCGTAATCCACACTAACCTCTCTTTGGCATCTATCTATCTTTGTTGGCGAACAGAAGGAAACGATGAGAACTTTCATTGGCGTATAAAGCAAGATAAGATACATAAATATTATTATATCAACACCCCATTTGGTGTCAAGACAAAAATTCACCCAAACCCAAAGTCAACACAACACAACACAACTGCTTTCCCAAACATGAAGAAGATCCCCAATCCCATACTCACACTCTTCATCCTCTTGAACTCACACCTGATAGCACTGGCACTGGCAACCATAGAAACATGTTTAGACAGCGTTTGCAACACTCACGAGCCACTAATCCGATTCCCGTTCCGCATAGAGGGAAAGCACGAAAATCCATGCGGATACCCTGGGTTCACAGTATCCTGCAGCGATAACGGCCAAACACTACTTAACCTATCTTCTTGCGGCGAACTCAAAATCCAAAAAATAAATTACGCAGCGCAGCAACTATGGGTGAACGACCCCAACAACTGCCTCCCAAAACGCCTTCTCTCTCTCAACCTCTCCGCCTCTCCCTTCGACGCCGTTTACCGCCAGGAATTCAGCTTCTTCAACTGCTCCTTCAACTTGGAGTATCTCGTCCGCCGCTACCGCCCTATAAATTGTCTCAGCGATTCTCCTAAGTATGTCGTTTTTGCGACGCCTTCTTCTTCGACCGTGTTCGGACACTTGTCGTCTGTGTGTGACTTGGTTGCGACGGTGAAGGTGCCGGTCCAGTCGCCGTTTCAAGATCGAATGATGTCGTCGGACCTCAGCGACGATCTACGACTCTCGTGGGACTCGCCGGCGTGCGGGAGGTGCGAGTCGCACGGTGGCCGGTGCGGCTTCAAGAGCAACGACACTTTTGAGCTCGACTGTTCCCCTGTCTCTTCACAAGGGATTTCCCGTGGTGCACGTTACGCCATAGTCATATGCATAGGGGTACCAGCTTTGTTGTGCTCCATGGGAGTGTTGAGTTGCATCTGCAGCTGGTTAAGAATCGGGACCTACGATGGGCCTTGGGCTCACGAAACAGTGCCAGATTTTGAGGCTCTAGCGGGCTCACGGCCCACCACAGTCTCGGGCCTCGACAGGCCCACAATTGAATCATACCCAAAAATAGTTATAGGTGAGAACAGACGATTACCCAAGAAGGGTGACAAAACCTGCTCAATATGCCTGTCAGAGTACATGCCCAAAGAGACAGTGAAAACAATACCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCGTCGTGCCCAATTTGCCGAACTTCTCCACAAAAGTTACCACAACCACGTGCTCGATCATCACCATAA 1377 0.496 MTHSKTRPQCVIHTNLSLASIYLCWRTEGNDENFHWRIKQDKIHKYYYINTPFGVKTKIHPNPKSTQHNTTAFPNMKKIPNPILTLFILLNSHLIALALATIETCLDSVCNTHEPLIRFPFRIEGKHENPCGYPGFTVSCSDNGQTLLNLSSCGELKIQKINYAAQQLWVNDPNNCLPKRLLSLNLSASPFDAVYRQEFSFFNCSFNLEYLVRRYRPINCLSDSPKYVVFATPSSSTVFGHLSSVCDLVATVKVPVQSPFQDRMMSSDLSDDLRLSWDSPACGRCESHGGRCGFKSNDTFELDCSPVSSQGISRGARYAIVICIGVPALLCSMGVLSCICSWLRIGTYDGPWAHETVPDFEALAGSRPTTVSGLDRPTIESYPKIVIGENRRLPKKGDKTCSICLSEYMPKETVKTIPECGHCFHAQCIDEWLPLNASCPICRTSPQKLPQPRARSSP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01392 458 SUPERFAMILY RING/U-box 394 448 - -
Pumo10g01392 458 Pfam Ring finger domain 400 443 IPR001841 -
Pumo10g01392 458 ProSiteProfiles Zinc finger RING-type profile. 401 443 IPR001841 -
Pumo10g01392 458 SMART ring_2 401 442 IPR001841 -
Pumo10g01392 458 Pfam Wall-associated receptor kinase galacturonan-binding 105 172 IPR025287 GO:0030247
Pumo10g01392 458 Pfam Wall-associated receptor kinase C-terminal 240 304 IPR032872 -
Pumo10g01392 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 448 IPR013083 -
Pumo10g01392 458 CDD RING-H2_EL5-like 401 443 - -
Pumo10g01392 458 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 88 446 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01392 Pumo-Chr10 18503365 18506755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01392 103 446 C3H Transcription Factor Family AT2G46495 36.080 4.88e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01392 - - gmx:100818969 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01392 10 18503365 18506755 Pumo10g01392 10 18503365 18506755 ECH