Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01386 ATGTCGGATCAATATATGGCAAGATTTCGGGATTGGAATTCAGACAAGGGTTCCGAGAGCAATTCTCCTGCAATTCATGTAACACGCTCGGGGAGAATCAGGAATACTCTAAATTCAGTTTCCGAGAAGTTTCAAAGGGGTTTGGAATCTAGTTCAGAGGGGATAAAGAGATTTAGAAAATCATTCAAATCTCTTCCCTATAACAGAGTTCTTTCTGGAAGTTTTAGTTCTAGAAAGAAAATCCTTGATCCGCTGGGCCCTTTCCTTCAAAAGTGGAACAAGATATTTGTATTATCATGTCTTATTGCTGTATCACTTGATCCTTTGTTCTTCTATGTCCCTGTGATTGATGATAACAAGAAATGTCTTTCAATGGACAGAAAAATGGAAATTACAGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGCGGTATCTATCATCATACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGCAATTCTGATTATCATTCCAAAGTTGAGCGGCTCTGAATCACTGAATACAAAGACCTTGCTGAAATTTATTGTCTTCTTCCAATATATCCCACGGTTTTTACGAATAATTCCATTATATAAAGAAGTTACTAGGACCTCTGGCATTCTCACTGAAACTGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTAGCAAGTCATGTTATTGGTGCATTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAGATGCATGTCGAAGAAATAGCACATGTAACACAGAAGCTATGTATTGTGATAATCGTCAAGTTTTCGGCACAATTTCGGCATTCCTGAATGCTTCTTGCCCAATACAGGATCAAAATACAACGCTCTTTAATTTTGGAATATTTCTTGATGCCCTTCAATCCGGAGTTGTGGAGTCAAGAGATTTCCCACAAAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTGAGTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACCACCAGATTGGAGGAAATGAGGGTAAAACGGAGAGATGCAGAACAGTGGATGTCCCATCGATTACTCCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAGTTTGATTCGAGATCTTCCCAAGGATTTAAGAAGGGATATTAAGCAGCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGACGACCAACTTTTGGATGCAATGTGTGACCGACTCAAGCCAGTGCTATACACAGAAGAAAGCTGCATTGTCCGAGAAGGAGATCCTGTTGATGAGATGCTCTTCATCATGCGCGGCAAGCTATTGACCGTGACCACCAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATACCTCAAGGCTGGTGACTTTTGTGGAGAGGAACTTCTCACATGGGCATTAGATCCTCAGTCCTCATCCAACCTTCCCATATCAACTAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCATTCGCTCTAAAAGCCGATGACTTGAAGTTTGTTGCATCTCAATTTCGGCGCCTTCATAGTAAGCAGCTTCGCCACACTTTCAGGTTTTACTCACAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCGTGGAGGCGCTATAGTAAAAAGAAGCTGGAAGAGTCTCTCAGGGAAGAGGAGAATAGGCTGCAAGATGCATTGGCCAAAGCAGGTGGTAGTTCACCTAGTCTAGGTGCCACAATATATGCTTCAAGATTTGCAGCCAATGCACTCAGACTTTTACGTAGAAATGGCACAAGGAAGACCAGGGTGCCAGAGAGAATATCACCCATGCTGCTGCAGAAGCCTGCTGAGCCTGATTTTACTTCTGAAGAGCAATAG 2142 0.4146 MSDQYMARFRDWNSDKGSESNSPAIHVTRSGRIRNTLNSVSEKFQRGLESSSEGIKRFRKSFKSLPYNRVLSGSFSSRKKILDPLGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDNKKCLSMDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIAMRYLSSYFLIDILAVLPLPQVAILIIIPKLSGSESLNTKTLLKFIVFFQYIPRFLRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRRNSTCNTEAMYCDNRQVFGTISAFLNASCPIQDQNTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDSLIRDLPKDLRRDIKQHLCLALLMRVPMFEKMDDQLLDAMCDRLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPQSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNGTRKTRVPERISPMLLQKPAEPDFTSEEQ 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01386 713 Coils Coil 636 656 - -
Pumo10g01386 713 CDD CAP_ED 484 615 IPR000595 -
Pumo10g01386 713 SUPERFAMILY Voltage-gated potassium channels 83 406 - -
Pumo10g01386 713 Gene3D Jelly Rolls 482 602 IPR014710 -
Pumo10g01386 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 63 708 - -
Pumo10g01386 713 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
Pumo10g01386 713 Pfam Cyclic nucleotide-binding domain 505 595 IPR000595 -
Pumo10g01386 713 ProSiteProfiles cAMP/cGMP binding motif profile. 484 568 IPR000595 -
Pumo10g01386 713 Gene3D Helix hairpin bin 410 475 - -
Pumo10g01386 713 FunFam Cyclic nucleotide-gated ion channel 1 482 600 - -
Pumo10g01386 713 Pfam Ion transport protein 92 411 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo10g01386 713 SMART cnmp_10 484 615 IPR000595 -
Pumo10g01386 713 SUPERFAMILY cAMP-binding domain-like 413 606 IPR018490 -
Pumo10g01386 713 Gene3D - 95 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01386 Pumo-Chr10 18409969 18417429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01386 7 712 Ion Channels AT5G53130 79.155 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01386 K05391 - gmx:100817516 1359.74