Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01372 ATGGACGATACCTTATGCGATATTTTCGAAGACAAAGAGTTTGGGAGCGACCAGTTTGGTGGTGACGATCTATTCTCCATTTTGGAGAGTTTAGAATCGGACTTCACCGATTTCCCACCTCCCATTAACGAAGAATTAGCTGTTGCTGTCTCTAAAGAGAACGAGGATGTCTCAAGATTGGTGTCTCAAAAGTCAACCTCTTCAAGTGCTCCACTAGATTCCGAAACTGAGCTTGAAACCTCTCCCAAAACCAAAAGACGGAAGCTTACTCCCACTACTCCAGAGGAAGCTAACCCAGATGGACAACAAAGGATGTCTCACATTACCGTTGAACGCAACAGGAGGAAGCAAATGAATGAACACTTGTCCGTGTTGAGGTCTCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGGTGCTGCAAGCCCTGGAGGCCAAGAAGCAGAGAAAAGTTTACAGCGAAGTCCTAAGCCCTAGGCTTAATGTTTCAAGCCCAAGGCCTTCACCACTGAGCCCGAGACTGAACTTGCCCATTAGTCCAAGGACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGCAGCAAGCTGGCTACAACAGCATCATTTCACCATCTCTGGACCCTTCTCCTACTTCTTCCGCTAACTCCTCCATCAACGACAACATCAACGAGCTCGTTGCAAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCGGGTCCCCACGTTCTTCTCAAAACGGTGTCGCAACGAATTCCAGGCCAGGCTCTGAAGATTATAACGGCCCTTGAGGATCTTGAACTTGAGATACTCCATGTCAACATTAACTGTGCTGCTGATGATACTATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 996 0.4699 MDDTLCDIFEDKEFGSDQFGGDDLFSILESLESDFTDFPPPINEELAVAVSKENEDVSRLVSQKSTSSSAPLDSETELETSPKTKRRKLTPTTPEEANPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLNVSSPRPSPLSPRLNLPISPRTPQPGSPYRPRLQQQAGYNSIISPSLDPSPTSSANSSINDNINELVANSKSPTADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLELEILHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01372 331 MobiDBLite consensus disorder prediction 187 204 - -
Pumo10g01372 331 PANTHER TRANSCRIPTION FACTOR FAMA 2 330 IPR044283 GO:0003700|GO:0010052
Pumo10g01372 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 101 169 IPR036638 GO:0046983
Pumo10g01372 331 MobiDBLite consensus disorder prediction 57 107 - -
Pumo10g01372 331 MobiDBLite consensus disorder prediction 176 209 - -
Pumo10g01372 331 Gene3D - 94 167 IPR036638 GO:0046983
Pumo10g01372 331 Coils Coil 319 331 - -
Pumo10g01372 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 153 IPR011598 GO:0046983
Pumo10g01372 331 MobiDBLite consensus disorder prediction 60 77 - -
Pumo10g01372 331 Pfam Helix-loop-helix DNA-binding domain 103 154 IPR011598 GO:0046983
Pumo10g01372 331 CDD bHLH_AtFAMA_like 105 176 - -
Pumo10g01372 331 MobiDBLite consensus disorder prediction 78 93 - -
Pumo10g01372 331 Coils Coil 146 166 - -
Pumo10g01372 331 SMART finulus 108 159 IPR011598 GO:0046983
Pumo10g01372 331 FunFam Transcription factor SPEECHLESS 94 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01372 Pumo-Chr10 18219784 18224884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01372 1 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.282 1.43e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g01372 HLH 7.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01372 K20558 - gmx:100777437 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01372 10 18219784 18224884 Pumo10g01372 10 18219784 18224884 ECH