Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01366 ATGGAAGAGAATATCCTATGCAAACACACAGTGCATCACAGCGTTACCAAGAAGCTCCTCTCCCCCAAAAAATCCCAAACCAATTCAACAGAGCGCAGAATAGTGCGGATATCATACACTGATCCAGACGCCACCGACTCCTCCAGCGACGAGGAAGGATTCCCCTTCCTTCGCCAAAGAATGAAGCGCTATGTTCAACAGATTGAGATAGAACCCGCCACCGCCACCGCCGCCGGTGACAAAGTCGTTTCCGCTTCTCGGAAGAGGCCCGCCGGTGAGGCTTGCCGGCGGCAAATGAAGCTCCACGCCGGGAAGAAGTTCCGCGGCGTCCGGCAGCGGCCGTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGGCGAGAAGAGTGCGTGTCTGGTTGGGAACCTACGACACCGCCGAGGAAGCTGCCATGGTTTACGACAATGCCGCTATTAGGCTTCGCGGCCCTGACGCCCTGACGAACTTCGTAACGCCGCCGCAAAGAGAGCCTCCGCCACCGTCGGCGGAGGTTCCCGAAATGAAGGTGGCGGTCACCGAAGAAGCCTCCGGGTCCGGCTACGATTCCGGCGACGATCACTGCCACCACAACCTCTCCTCTCCCACTTCGGTGCTCCATTTCCGAAGCGAAGAAAATTCAGTGTCTCAAAAACCAGAAGAAGTGTTCAGTGAGTGTCAGGGCGAGACTGAAACAAGTTTGTTCGACGAGACGGGGGAGTTTTTCGCGCTGGACAACATGCCTACTTGGGATGACGTGTTCAATTTCGAAACGCCAGAGTACCCTCCTCTTGTGTTTCAGGAGGAGCATCTACTACTACACGATCAGTCCCAGATGTTGGCCGAAACGGTGTCGTTTTCCGCGGAGGAAGGTTTCAGTGACAGTAGTATCGTGCTCGCGGACTCGCTCATAGATTTCGACAGAGCGTGCCCTCCGCCATCTAGCTTGTGCCAAGTGGACGATTACATTTTGTTAGGTTCTGAGACTCAAAGTGAGTGA 1014 0.5552 MEENILCKHTVHHSVTKKLLSPKKSQTNSTERRIVRISYTDPDATDSSSDEEGFPFLRQRMKRYVQQIEIEPATATAAGDKVVSASRKRPAGEACRRQMKLHAGKKFRGVRQRPWGKWAAEIRDPARRVRVWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPQREPPPPSAEVPEMKVAVTEEASGSGYDSGDDHCHHNLSSPTSVLHFRSEENSVSQKPEEVFSECQGETETSLFDETGEFFALDNMPTWDDVFNFETPEYPPLVFQEEHLLLHDQSQMLAETVSFSAEEGFSDSSIVLADSLIDFDRACPPPSSLCQVDDYILLGSETQSE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01366 337 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 236 - -
Pumo10g01366 337 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Pumo10g01366 337 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Pumo10g01366 337 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
Pumo10g01366 337 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Pumo10g01366 337 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Pumo10g01366 337 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Pumo10g01366 337 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Pumo10g01366 337 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Pumo10g01366 337 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01366 Pumo-Chr10 18138774 18140210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01366 7 224 AP2-EREBP Transcription Factor Family AT4G27950 48.908 2.31e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo10g01366 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01366 - - gmx:100807598 513.072