Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01365 ATGGAAGAGAATATCCTATGCAAACACACAGTGCATCACAGCGTTACCAAGAAGCTCCTCTCCCCCAAAAAATCCCAAACCAATTCAACAGAGCGCAGAATAGTGCGGATATCATACACTGATCCAGACGCCACCGACTCCTCCAGCGACGAGGAAGGATTCCCCTTCCTTCGCCAAAGAATGAAGCGCTATGTTCAACAGATTGAGATAGAACCCGCCACCGCCACCGCCGCCGGTGACAAAGTCGTTTCCGCTTCTCGGAAGAGGCCCGCCGGTGAGGCTTGCCGGCGGCAAATGAAGCTCCACGCCGGGAAGAAGTTCCGCGGCGTCCGGCAGCGGCCGTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGGCGAGAAGAGTGCGTGTCTGGTTGGGAACCTACGACACCGCCGAGGAAGCTGCCATGGTTTACGACAATGCCGCTATTAGGCTTCGCGGCCCTGACGCCCTGACGAACTTCGTAACGCCGCCGCCGCCGCAAAGAGAGCCTCCGCCACCGTCGGCGGAGGTTCCCGAAATGAAGGTGGCGGTCACCGAAGAAGCCTCCGGGTCCGGCTACGATTCCGGCGACGATCACTGCCACCACAACCTCTCCTCTCCCACTTCGGTGCTCCATTTCCGAAGCGAAGAAAATTCAGTGTCTCAAAAACCAGAAGAAGTGTTCAGTGAGTGTCAGGGCGAGACTGAAGCGAGTTTGTTCGACGAGACGGGGGAGTTTTTCGCGCTGGACAACATGCCTACTTGGGATGACGTGTTCAATTTTGAAACGCCAGAGTACCCTCCTCTTGTGTTTCAGGAGGAGCATCTACTACTACACGATCAGTCCCAGATGTTGGCCGAAACGGTGCCGTTTTTCGCTGAGGAAGGTTTCAGTGACAGTAGTATCGTGCTCGCGGACTCGCTCATAGATTTCGACAGAGCGTGCCCTCCGCCATCTAGCTTGTGCCAAGTGGACGATTACATTTTGTTAGGTTCTGAGACTCAAAGTGAGTGA 1020 0.5578 MEENILCKHTVHHSVTKKLLSPKKSQTNSTERRIVRISYTDPDATDSSSDEEGFPFLRQRMKRYVQQIEIEPATATAAGDKVVSASRKRPAGEACRRQMKLHAGKKFRGVRQRPWGKWAAEIRDPARRVRVWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPPPQREPPPPSAEVPEMKVAVTEEASGSGYDSGDDHCHHNLSSPTSVLHFRSEENSVSQKPEEVFSECQGETEASLFDETGEFFALDNMPTWDDVFNFETPEYPPLVFQEEHLLLHDQSQMLAETVPFFAEEGFSDSSIVLADSLIDFDRACPPPSSLCQVDDYILLGSETQSE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01365 339 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Pumo10g01365 339 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Pumo10g01365 339 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Pumo10g01365 339 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
Pumo10g01365 339 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Pumo10g01365 339 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Pumo10g01365 339 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 238 - -
Pumo10g01365 339 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Pumo10g01365 339 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Pumo10g01365 339 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01365 Pumo-Chr10 18125628 18127654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01365 7 226 AP2-EREBP Transcription Factor Family AT4G27950 48.918 1.73e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g01365 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01365 - - gmx:100807598 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01365 10 18125628 18127654 Pumo10g01365 10 18125628 18127654 ECH