Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01362 ATGGACAAGAAGCTGCCCCTCTTGTTCATCTTTTCAGTAGCCTTGGTGATGAAAGCAGTGTTGGTTAGTGTTGTGGCTGAACCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTGACAACATGAATCACTCTCCTCGTGTCAGCTGGGATGAGAACACTTCAGTTTGCCAAAGCTGGAGAGGAGTGACTTGCAACTCTGACAAGTCCAGAGTTATAGCCCTCCGATTGCCAGGAGCTGGGTTGAGTGGTCCAATCCCTCCTAACACTCTCAGTCGCCTCACAGCACTTGAAATTGTGAGTCTTAGATCAAATGGTATAACAGGCCCTTTCCCTGATGATTTCTCTGAGCTGAAAAACTTGACCAGCCTCTATCTCCAATCCAACAAGTTTTCTGGGCCATTGCCATTGGATTTTTCAGTTTGGAATAATCTTAGTGTTGTCAATTTGTCCAATAATTCTTTTAATGGGAGCATCCCTTTTTCAATTTCTAATCTGACTCATCTCACTTCATTAGTCCTTGCCAACAACTCCCTTTCGGGTCAGATTCCTGATCTCAATGTTCCTAGCCTGCAAGAGCTGAATTTGGCCAACAATAACCTTAGCGGGGTTGTGCCTAAATCGCTTCTTAGATTTCCTAGTTCGGCCTTTGCTGGTAACAATCTTACATCAGCAGATGCACTCCCTCCAGCTTTACCAATGGAGCCTCCAGCAGCCCTTCCAGCAAAGAAATCCAAAGGACTCAGTGAACCTGCATTGTTGGGTATCATCATTGGTGCTTGTGTGCTGGGGTTTGTGGTGATTGCAGGTTTCATGATTGTGTGCTGCTATCAGAATGCAGATGTGGATGTGCAAGCAGTGAAATCTCAGAAAAAACAAGCCTCACTGAAAACAGAATCTTCTGGAAGTCAAGACAAGAACAACAAAATTGTCTTCTTTGAGGGTTGCAATCTTGCATTTGATCTAGAGGATTTGTTGAGAGCGTCTGCTGAAATTCTTGGAAAGGGTACCTTTGGCATGACATATAAGGCTGCTCTAGAGGATGCAACCACTGTGGTGGTGAAGAGGTTGAAGGAGGTCACAGTTGGAAAACGAGATTTTGAACAGCAGATGGAGGTGGTGGGGAAAATTAAGCACGAAAATGTGGATGCAGTGAGGGCATATTACTATTCAAAGGAGGAGAAACTCATAGTATATGATTACTATCAACAAGGCAGCGTTTCTGCAATGTTACATGGCAAAGGAGGGGAAGGCAGAAGTTCTTTAGACTGGGAAAGCCGCTTGAGAATTGCAATTGGTGCAGCCAGAGGCATTGCTCACATCCACGCTCAACATGGAGGGAAACTTGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATATGGATGCATATCTGATATTGGCTTGGCAACGTTGATGAGTCCAATACCCATGCCAGCAATGAGAGCAACGGGATACCGTGCACCGGAAGTAACAGACACGCGCAAAGCAACTCATGCATCTGATGTTTACAGCTTTGGGGTGTTGCTACTTGAGCTTCTGACTGGGAAATCCCCCATAAACAGCACAGAAGGTGAGCAAGTTGTCCACTTGGTTAGATGGGTGAATTCCGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTAGAGCTGTTGAGGTATCCAAACATAGAGGAAGAAATGGTGGGGATGCTACAAATAGGGATGGCTTGTGCTGCAAGAATACCGGATCAGAGACCAAAGATACCTGACGTGGTGAGAATGGTGGAAGAGATTCGTCGTGTAAATACGCCAAATCTACCATCCACCGAGTCTAGATCAGAAGTTTCTACACCCACCCCTCGTGCAGTTGATATACCTTCTACCTCTGTTCAACAATGA 1899 0.4513 MDKKLPLLFIFSVALVMKAVLVSVVAEPVEDKQALLDFLDNMNHSPRVSWDENTSVCQSWRGVTCNSDKSRVIALRLPGAGLSGPIPPNTLSRLTALEIVSLRSNGITGPFPDDFSELKNLTSLYLQSNKFSGPLPLDFSVWNNLSVVNLSNNSFNGSIPFSISNLTHLTSLVLANNSLSGQIPDLNVPSLQELNLANNNLSGVVPKSLLRFPSSAFAGNNLTSADALPPALPMEPPAALPAKKSKGLSEPALLGIIIGACVLGFVVIAGFMIVCCYQNADVDVQAVKSQKKQASLKTESSGSQDKNNKIVFFEGCNLAFDLEDLLRASAEILGKGTFGMTYKAALEDATTVVVKRLKEVTVGKRDFEQQMEVVGKIKHENVDAVRAYYYSKEEKLIVYDYYQQGSVSAMLHGKGGEGRSSLDWESRLRIAIGAARGIAHIHAQHGGKLVHGNIKASNIFLNSQGYGCISDIGLATLMSPIPMPAMRATGYRAPEVTDTRKATHASDVYSFGVLLLELLTGKSPINSTEGEQVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVGMLQIGMACAARIPDQRPKIPDVVRMVEEIRRVNTPNLPSTESRSEVSTPTPRAVDIPSTSVQQ 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01362 632 PANTHER OS05G0588300 PROTEIN 12 608 - -
Pumo10g01362 632 MobiDBLite consensus disorder prediction 602 632 - -
Pumo10g01362 632 Gene3D Transferase(Phosphotransferase) domain 1 403 616 - -
Pumo10g01362 632 FunFam pollen receptor-like kinase 1 296 401 - -
Pumo10g01362 632 ProSitePatterns Protein kinases ATP-binding region signature. 333 364 IPR017441 GO:0005524
Pumo10g01362 632 Pfam Protein tyrosine and serine/threonine kinase 331 542 IPR001245 GO:0004672|GO:0006468
Pumo10g01362 632 ProSiteProfiles Leucine-rich repeat profile. 190 211 IPR001611 GO:0005515
Pumo10g01362 632 SUPERFAMILY L domain-like 48 212 - -
Pumo10g01362 632 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Pumo10g01362 632 Gene3D Ribonuclease Inhibitor 29 233 IPR032675 -
Pumo10g01362 632 Pfam Leucine Rich Repeat 190 210 IPR001611 GO:0005515
Pumo10g01362 632 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01362 632 Gene3D Phosphorylase Kinase; domain 1 291 401 - -
Pumo10g01362 632 SUPERFAMILY Protein kinase-like (PK-like) 331 596 IPR011009 -
Pumo10g01362 632 FunFam Probable inactive receptor kinase RLK902 28 187 - -
Pumo10g01362 632 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 402 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01362 Pumo-Chr10 18090607 18093521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01362 26 619 Receptor kinase-like Gene Family AT4G23740 58.158 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo10g01362 PK_Tyr_Ser-Thr 5.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01362 - - gmx:100813065 1118.99