Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01355 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCATCCATCTCTGCTTTGAACCAGGAAGGCCTCTCTCTACTTTCATGGCTTTCAACCTTCAACTCCTCCAACTCTGCTACTGCCTTCTCTTCATGGGATCCAACCCACAAAGATCCTTGCACATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGAGATCATAATAACATCCATTGATCTACGTAGCAGCTTCCCCTCAGAGCTCCATTCTTTTGGCCACCTCACCACTCTTGTCATCTCAAACGGAAATCTCACTGGTCAGATTCCAAGTTCAGTGGGAAACTTGTCCTCTTTGGTCACTCTGGACCTTAGCTTCAATGCTTTATCAGGAAGCATTCCGGAAGAAATAGGAAAGCTATCTAACCTGCAGCTGTTGTTGCTGAATTCAAATTCTTTGCAGGGTGGAATTCCAACCACAATTGGAAACTGTTCAAAGCTTCAGCATGTGGCACTTTTTGACAACCAGCTCTCTGGAATGATACCTGGGGAAATAGGCCAGTTGAGGGCTCTTGAAACACTAAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCGGTTACTGGGGTTTCTGGGCAGATTCCACCAAGTATAGGAGGGCTTAAGAATCTCAAGACACTTTCAGTCTACACAGCACATCTCACAGGTCATATCCCAGCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAGTATTCCTTATGAATTAGGCTCCATGCAAAGCCTCAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGCACCATTCCAGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTCTGGGGGGTCAGATACCTGCGACTCTCAGTAGTCTACTCTTACTGGAGGAGTTTCTTTTGTCTGATAATAATATTTATGGACAAATACCTTCCTATGTTGGCAACTTTTCCAAGCTGAAGCAAATTGAATTGGATAACAACAAAATCTCTGGGGAGATTCCACCTGTTATGGGGCAACTGAAGGAACTCACCCTCTTCTATGCCTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTATCCAACTGTGAGAAACTTGAAGCACTTGATCTTTCACACAATTTCCTCACTGGCTCCATTCCAAATTCACTCTTTCATCTAGGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCAGATATTGGCAGTTGCACCAGCTTGATCAGGTTACGGCTGGGATCAAACAACTTTACCGGTCAAATTCCACCAGAAATAGGTCGTTTAACCAGTTTGAGCTTTCTTGAGTTGTCAAATAATCTACTCAGTGGAGATATTCCCTATGAGATAGGTAACTGTGCTCATCTAGAATTGCTTGACTTGCACAGCAATGCGCTGCAAGGAACCATTCCTTCCTCATTAAAATTCCTAGTTGGTCTTAATGTGTTAGATCTTTCTGCAAACAGAATAACTGGAAGCATTCCTGAGAATTTGGGCAAGCTTAAATCTCTAAATAAGTTGATTCTAAGTGGAAACCTTATCTCTGGTGTGATCCCTGGGACACTGGGGCTGTGTAAGGATTTGCAGTTGCTGGATATGAGTAACAATAGGATCAATGGTTCTATTCCAGATGAGATTGGTCATTTACAAGAATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTACAGGCCCCATCCCAGAGACCTTCTCAAATCTCTCAAAACTCTCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCACGGTACTGGTTAATCTAGACAATCTTGTGTCTCTAAATGTCTCCTACAATAGCTTTTCTGGTTCTCTTCCTGATACGAAGTTCTTCCGGGATCTACCTGCTGCTGCATTTGCCGGTAACCCTGACCTTTGCATTAGCAAGTGTCATGCAAGTGAAAATGGTCAAGGCGTCAAGTCAATAAGAAATGTTATTATCTACACTTTCCTTGGGGTTGTTTTAATTTCTATTTTTGTCACTTGTGGAGTAATTTTAACTCTCAGAATTCAAGGGGGCAACTTTGGGAGGAATTTTGATGAAGGTGGTGAAATGGAATGGGCTTTCACTCCATTCCAAAAGCTCAACTTCTCCATCAATGACATTGTGACAAAGTTGTCAGAATCAAACATTGTGGGAAAGGGTTGCTCAGGAATTGTTTATCGTGTAGAGACTCCAATGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGGGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACACAAGAATATACTGAGACTTTTAGGATGCTGTGACAATGGAAGAACTAGGTTGCTCTTGTTTGATTATATATACAATGGGAGTTTGTTTGGATTGCTCCATGAAAAGAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAACAGCTCATGGTCTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCACAGGGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCTGACTTTGGCCTTGCAAAACTCGTGAATTCCTCAGAGTGTTCAGGAGCCTCTCATACAGTTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGTTTCGGTGTTGTGCTCCTTGAGGTCTTAACGGGGATGCAACCAACTGATAATAGGATTCCAGAGGGTGCTCACATTGTCACATGGGTTAGCAACGAAATCCGAGAGAAGAGAAGAGAATTTTCATCTATCCTTGACCAGCAACTAGTATTGCAGAGTGGAACAAAAACCTCTGAGATGCTTCAGGTTCTAGGAGTGGCTCTCCTATGTGTGAATCCTTCCCCAGAAGAACGACCTACTATGAAAGATGTAACAGCAATGCTCAAGGAGATCAAGCATGAAAATGATGATTTCGAGAAACCAAATTTTCTCCATAAAAGCATGGTTACCACCAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATAATAGAATCAACATCTTCTTCTGTATAG 3267 0.4184 MSSNALTLFILFLNISLCPSISALNQEGLSLLSWLSTFNSSNSATAFSSWDPTHKDPCTWDYITCSKEGFVSEIIITSIDLRSSFPSELHSFGHLTTLVISNGNLTGQIPSSVGNLSSLVTLDLSFNALSGSIPEEIGKLSNLQLLLLNSNSLQGGIPTTIGNCSKLQHVALFDNQLSGMIPGEIGQLRALETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGQIPPSIGGLKNLKTLSVYTAHLTGHIPAEIQNCSALEDLFLYENQLSGSIPYELGSMQSLRRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLGGQIPATLSSLLLLEEFLLSDNNIYGQIPSYVGNFSKLKQIELDNNKISGEIPPVMGQLKELTLFYAWQNQLNGSIPTELSNCEKLEALDLSHNFLTGSIPNSLFHLGNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGQIPPEIGRLTSLSFLELSNNLLSGDIPYEIGNCAHLELLDLHSNALQGTIPSSLKFLVGLNVLDLSANRITGSIPENLGKLKSLNKLILSGNLISGVIPGTLGLCKDLQLLDMSNNRINGSIPDEIGHLQELDILLNLSWNSLTGPIPETFSNLSKLSILDLSHNKLTGTLTVLVNLDNLVSLNVSYNSFSGSLPDTKFFRDLPAAAFAGNPDLCISKCHASENGQGVKSIRNVIIYTFLGVVLISIFVTCGVILTLRIQGGNFGRNFDEGGEMEWAFTPFQKLNFSINDIVTKLSESNIVGKGCSGIVYRVETPMKQIIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNILRLLGCCDNGRTRLLLFDYIYNGSLFGLLHEKRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVNSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLLEVLTGMQPTDNRIPEGAHIVTWVSNEIREKRREFSSILDQQLVLQSGTKTSEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIKHENDDFEKPNFLHKSMVTTNPKAAVHCSSFSRSCEPLIIESTSSSV 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01355 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Pumo10g01355 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Pumo10g01355 1088 SMART serkin_6 763 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01355 1088 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Pumo10g01355 1088 PRINTS Leucine-rich repeat signature 408 421 - -
Pumo10g01355 1088 PRINTS Leucine-rich repeat signature 622 635 - -
Pumo10g01355 1088 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Pumo10g01355 1088 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Pumo10g01355 1088 Gene3D Phosphorylase Kinase; domain 1 739 841 - -
Pumo10g01355 1088 SMART LRR_typ_2 285 309 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 549 572 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 622 644 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 477 501 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 645 678 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 429 453 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 357 381 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 116 139 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 140 164 IPR003591 -
Pumo10g01355 1088 SMART LRR_typ_2 525 548 IPR003591 -
Pumo10g01355 1088 Gene3D Ribonuclease Inhibitor 179 280 IPR032675 -
Pumo10g01355 1088 Gene3D Ribonuclease Inhibitor 431 692 IPR032675 -
Pumo10g01355 1088 SUPERFAMILY RNI-like 269 646 - -
Pumo10g01355 1088 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01355 1088 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Pumo10g01355 1088 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Pumo10g01355 1088 Pfam Protein kinase domain 765 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01355 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Pumo10g01355 1088 Gene3D Ribonuclease Inhibitor 361 429 IPR032675 -
Pumo10g01355 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Pumo10g01355 1088 Gene3D Transferase(Phosphotransferase) domain 1 842 1061 - -
Pumo10g01355 1088 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Pumo10g01355 1088 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Pumo10g01355 1088 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Pumo10g01355 1088 Gene3D Ribonuclease Inhibitor 281 360 IPR032675 -
Pumo10g01355 1088 SUPERFAMILY L domain-like 28 302 - -
Pumo10g01355 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Pumo10g01355 1088 SUPERFAMILY Protein kinase-like (PK-like) 750 1048 IPR011009 -
Pumo10g01355 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Pumo10g01355 1088 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Pumo10g01355 1088 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 1039 - -
Pumo10g01355 1088 SMART LRR_sd22_2 622 647 - -
Pumo10g01355 1088 SMART LRR_sd22_2 381 407 - -
Pumo10g01355 1088 SMART LRR_sd22_2 573 596 - -
Pumo10g01355 1088 SMART LRR_sd22_2 116 145 - -
Pumo10g01355 1088 SMART LRR_sd22_2 525 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01355 Pumo-Chr10 18004850 18008984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01355 23 1077 Receptor kinase-like Gene Family AT5G56040 47.005 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo10g01355 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01355 - - gmx:100807225 1971.44