Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01330 ATGGAGGATTCTTCAGCAGGTGAAGACACCAAGACTTGCCCCCGTGGCCACTGGAGACCCGCTGAGGATGAAAAGCTTAGACAACTTGTTGAGCAATATGGTGCCCAAAACTGGAATTCAATCGCTGAGAAGCTCCAAGGAAGATCAGGGAAGAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCAAGAATTAACAGAAGACCATTCACGGAAGAGGAAGAAGAGAGGTTACTCGCAGCACATCGCATTCACGGGAACAAGTGGGCACTTATAGCGAGGCTTTTCCCCGGTCGAACCGATAATGCTGTGAAGAACCACTGGCACGTTATAATGGCGAGAAAGCAAAGGGAACAGTCCAAGTTATGTGGGAAGAGAAGCTTCCAAGACGTTTACAACGATTCCACCTCCACGTTCCTCGAAAAAAGAACACTACAATCTCATCAAGACCTATTGTTTAGTACTAGTACGAGATTTGGGTTCGAGAATGGAAGATTCTTTGACTTTCGAAGCCTCGATAACAATAAGGATAATAATAATAATAATAATAGGATAGTGTCAGATACTCCCTCTAGTAATTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCACCGCCACAAACGGTTCTACTGTAGTGGATAGAAAAGGAGGGAGAGACTATTTCAACAGTTCTTCTTCTTGTTCTTCTAGTGTTTATCTCTCAGAATGTTCCAGAACCTCAGATAGATCTTTTCTTTACAGAATTTATCCAAATCCTGCATTTTCTCTTCCCAACTACAAGAGGGTTGTTCCAACTAGTCCTTTTAGTTTCCTTGGTTCTTCTGATCATGATGGAAGGATAAAGAGGGACTTGATGAGTTTCTGTGATAATAACAACTCATCCACATTCACCAAGTTGAAGGAGAAAGATCATCAACAACAAACAAATGAATATGAGACCAATATCGAGCCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCGTAA 1011 0.4224 MEDSSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSTSTFLEKRTLQSHQDLLFSTSTRFGFENGRFFDFRSLDNNKDNNNNNNRIVSDTPSSNSLASWNFASVPTTTATNGSTVVDRKGGRDYFNSSSSCSSSVYLSECSRTSDRSFLYRIYPNPAFSLPNYKRVVPTSPFSFLGSSDHDGRIKRDLMSFCDNNNSSTFTKLKEKDHQQQTNEYETNIEPKEVPFIDFLGVGVSSS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01330 336 CDD SANT 18 59 IPR001005 -
Pumo10g01330 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo10g01330 336 SMART sant 14 63 IPR001005 -
Pumo10g01330 336 SMART sant 66 114 IPR001005 -
Pumo10g01330 336 Pfam Myb-like DNA-binding domain 18 78 - -
Pumo10g01330 336 PANTHER MYB PROTEIN-RELATED 15 194 - -
Pumo10g01330 336 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Pumo10g01330 336 MobiDBLite consensus disorder prediction 1 21 - -
Pumo10g01330 336 FunFam MYB transcription factor 68 138 - -
Pumo10g01330 336 FunFam MYB transcription factor 15 66 - -
Pumo10g01330 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Pumo10g01330 336 Gene3D - 15 66 - -
Pumo10g01330 336 Gene3D - 69 130 - -
Pumo10g01330 336 CDD SANT 69 109 IPR001005 -
Pumo10g01330 336 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Pumo10g01330 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01330 Pumo-Chr10 17641979 17644045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01330 13 172 MYB Transcription Factor Family AT1G17950 62.500 9.96e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g01330 Myb_DNA-bind_6 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01330 K09422 - gmx:100817328 550.436