Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01323 ATGGATAGCCCTCCTTCTGCATCTTACGTAGTGGTTGCATGTGATGCCACTAGGGATCGCACTGAACACGAAATCAAACTCGTTGTTGATCATGTTCGGGCCAGGCGTGTCTTTCTATCTGCTGGTGACAAGTTGCTTGTGCTATGTGTCTTGCATAAGGTGTCTCACCCTATGGGGTACCAGACATTAGCATGTCCCGAGTCTTTTGCTGGAACCAACTTTCGTGCAATGGAGGATGAAGTCAAAAAGAAAGTTGATGCATATGCAACTGAGCTTTTGTCAAGTTATGAAGATTTTGAAAGTGAAGGGGTTAGTATCGAAGTTAAAGTCACCGCGGGATTTCCAATTAAACAGGTTGTTTTACAAGAGGTTACAAACTACAATGCATCTTGGATAATACTTGACAGACATCTTCGGCGCGACCTGAGGTACCACCTTAGCAAGATGCCATGCAAGGTTGCATTGGTTAAAGATGACTTGTCTCTGGATATCTGGAGATCTCATTATGCACATGACACAAAGATCACAGAAACAAAATGTGTATATTCTTTGTCAAAGTTTGTGTCGCTATCTGAGTGTCATAGTGTTGAAGACATTGAGCATTCTATTATCTCTTGCAAAAGTTATCCCCATTCTATATTTTCTACTGATAGCTCTACTACGATTAGGAGCTATACAAAGCAGTCATATGGTAACAGGTCACGAGAGAACAGTTCCTTATCAGATTTTGGATCTTCTTCTAAGCAAGAAAGATCAGGCATAAGCATCAAAGGAGAATATAGGCATCTCATTACTTCTCAGATTGACCAAAAGCAAAACCAAAGTGGCTTTCTGCCAAAACATTCAGATGCACCGCTTCTTTGTACTGGCTGTGGGACAAGAACTGAGTTGTCTATCAAGGAGTCAATGAAGTTCAGCTATTCTGACATACAAAATGCAACAAATGATTTTTCAAAGGATAACTTATTAGGTGAAGGTGGATATGGTCACGTATATAAGGGTGTTCTTAAAGATGGACAGCAAATTGCCGCAAAGGTAAGGAAAGAAGAAAGCTCACAAGGATTTCCTGAATTTCATTCTGAGGTGTACGTCTTAAGTTTTGCTCGACACAAGAACATAGTGATGCTGTTGGGTTACTGTTGCAAAGAAAAGAAAAACATCCTGATTTATGAATATATTTGCAACAAGTCTCTCCATTGGCATTTATTTGAAAATAATGAAGCTGTTCTTGAGTGGCACCAAAGGTATGCCATTGCCATTGGGACTGCAAAGGGATTGCGTTTTCTACATGAGGAATGCCGTGGTGGTCCTATTATTCATCGGGACATGCGACCAAGCAATATACTTCTCACCCATGATTTTGTTCCCATGCTAGGTGACTTTGGCCTTGCTAAATGGAAAACTGGTGATGAAACTCTGCAAACAAGGATAATGGGCACATTAGGATACCTTGCCCCAGAGTATGCTGAAGACGGTATTGTTTCTGTGGGAACAGATGTGTATTCCTATGGCATTGTTCTGTTACAATTGATATCAGGGCGCCAGGTTGGCAATTCCAACAATCCAGAACAACAACAATCTCTCCGACAATGGGCTGAGCCAATGATAGAGAAGTTGGCCTTACATGAACTGATTGACACTCGTCTAGGGGAATCATATGACACGTATGAACTCTACCTCATGGCTAAAGCAGCATACTTCTGTGTGCAAAGGAAACCTGAGATGCGTCCATCAATGGGAGAGGTTGTGCGACTTCTTGAGGGAGAAAGTAGCCACTTCCACTCCTTGGAAGATCAATTTGTACCTAATTATAATTTATAA 1821 0.4135 MDSPPSASYVVVACDATRDRTEHEIKLVVDHVRARRVFLSAGDKLLVLCVLHKVSHPMGYQTLACPESFAGTNFRAMEDEVKKKVDAYATELLSSYEDFESEGVSIEVKVTAGFPIKQVVLQEVTNYNASWIILDRHLRRDLRYHLSKMPCKVALVKDDLSLDIWRSHYAHDTKITETKCVYSLSKFVSLSECHSVEDIEHSIISCKSYPHSIFSTDSSTTIRSYTKQSYGNRSRENSSLSDFGSSSKQERSGISIKGEYRHLITSQIDQKQNQSGFLPKHSDAPLLCTGCGTRTELSIKESMKFSYSDIQNATNDFSKDNLLGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFPEFHSEVYVLSFARHKNIVMLLGYCCKEKKNILIYEYICNKSLHWHLFENNEAVLEWHQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWKTGDETLQTRIMGTLGYLAPEYAEDGIVSVGTDVYSYGIVLLQLISGRQVGNSNNPEQQQSLRQWAEPMIEKLALHELIDTRLGESYDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGESSHFHSLEDQFVPNYNL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01323 606 PANTHER OS01G0750732 PROTEIN 193 592 - -
Pumo10g01323 606 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 393 601 - -
Pumo10g01323 606 CDD STKc_IRAK 323 588 - -
Pumo10g01323 606 MobiDBLite consensus disorder prediction 225 252 - -
Pumo10g01323 606 Gene3D Phosphorylase Kinase; domain 1 290 392 - -
Pumo10g01323 606 ProSiteProfiles Protein kinase domain profile. 317 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01323 606 SUPERFAMILY Protein kinase-like (PK-like) 301 586 IPR011009 -
Pumo10g01323 606 Pfam Protein kinase domain 318 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01323 606 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 289 392 - -
Pumo10g01323 606 Gene3D Transferase(Phosphotransferase) domain 1 394 600 - -
Pumo10g01323 606 Gene3D HUPs 10 158 IPR014729 -
Pumo10g01323 606 ProSitePatterns Tyrosine protein kinases specific active-site signature. 438 450 IPR008266 GO:0004672|GO:0006468
Pumo10g01323 606 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01323 Pumo-Chr10 17527516 17532255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01323 305 587 Trihelix Transcription Factor Family AT5G38560 44.483 3.09e-79 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Pumo10g01323 Pkinase 5.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01323 - - vun:114163670 1106.28