Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01299 ATGGGGACTGAGGATGGAACAAGCGATGCTGATAAGACTGAATGTGATGAACGAATTCAGTGTTTGAAAGGTGAAGCCATGAATGGGGGGGTGGCAATTGCGGATGGGAATTGTGTTACTGAAGAGGGTCAGCTCTTGAAAAGTGGAGCCATGAATGATGGGGTGGCAATTGCTGATGCAAATGGTGTTGCTGGAGAGGGTAGGGTCTTGAAAAGTGAACCCTTTAGTAATGGGGCTGCAGTTGCAGATAAAGGGGACTCTGGTGGAGTTGAATGTTTGCAAACTTATAAGAGGCGTAAGAAAAGTTCAAAAGGAAAAGTTCAGGAACAATGCAGAGAAACCGTGGAAACTGCAAGTCATATAGCAGATCAGGATGTGAAGACACCGTGTGATGTAGCTTTAGGCAATACTTCAGATGACTGTTCCCCTGGACAGTGGGGAAATATTGTACTAAAGCATTTATATCAGTCATTAGGTGATGGCAATGGTGGCATAGAGGGCTGCATAAGGGAGGCACTTATTCATCATCCTAAACTTAATCATGCCGCTACAGTTATGGAAACTTTTAAAATTGACAAAGATGGACAAGAATGCTCTTTGCAATTTGAGCGGCTTTCTCATAGAACAGGGAAGGAAGCTAATGGGCATGCAGATGTCATGTGTAATGGATGTTCTAGTGAATCACCTGACCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCTGTAATGTCTTAACCTCAGAAAAATTCAGTTCATTATGTAAGGCTTTACTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTATTTGACTTTACTGTCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAACACTCTTCTTGTCCGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAATGAGATTGCTGCTCTTGCCAAGAGCCTCTCCAACATGTCAAGAACTTCCTACTCTGAGCTGGTGGGAATTCCAGCACAGAGCACATTTCAAGATGAGAAGCAAGCGTTCTACAACCGGGAATTTGACTGTCGCATGAAACCAGAACAGACACAAGAATGTGTTATGCACAAAATTTGCAGTTGCAGGCGTTGTGGAGAGAAGGCAGATGACACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATACCATGTGTCCTGTATTGAGCCTGCAGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGCCAATTGTACTGCTAATGGGATTGGATCTCCACATGAGAATTGTGTGCTATGTGAAAGGTTAAATGATGCAAAAACCCCAGATGACGTAATTGGTGATGAAAGCTTTCCTACAATTGAGGAAACACAAAATGAATTTGAAGAGAATTCAAATTGCACCTCTGATGGAATTCAGGTTTCGACAGGTGAGGAAAAAACACCCAATTGCAAGATATGTGGAAATGAAGTGGATGGTGGAAAAATAAAAATATGTGGCCATCAGTTTTGCTCCAATAAATACTACCATATAAGGTGTTTAACAAACAAGCAGTTGAAGTCATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCCGGGTTTGCTTAACTGATCGAGATGATGATCAGATTGTTCTGTGTGATGGCTGTGATCATGCATATCACACCTATTGCATGAAACCTCCGCAAACTTCTATTCCAAGAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATACAAGCAATCCGCCAGGCTAAAAAGGCATATGAGAGTAAAAAGCTAAGAAGAAATGGCGAAGATGCTGCAAAGCCGAATGCTAATCTTGAAAAGAAAAACAACAATAAACGTGTACGAGAATTGGAAAGTGGTGGTTTAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAGGAGAAAGAGGCGGCAATGCAGATCGAGTCACAGAGAACATGA 1950 0.4195 MGTEDGTSDADKTECDERIQCLKGEAMNGGVAIADGNCVTEEGQLLKSGAMNDGVAIADANGVAGEGRVLKSEPFSNGAAVADKGDSGGVECLQTYKRRKKSSKGKVQEQCRETVETASHIADQDVKTPCDVALGNTSDDCSPGQWGNIVLKHLYQSLGDGNGGIEGCIREALIHHPKLNHAATVMETFKIDKDGQECSLQFERLSHRTGKEANGHADVMCNGCSSESPDHGVTEMCQRVLCNVLTSEKFSSLCKALLENFQGMKPESVFDFTVMNSRMKEQAYEQSPTLFLSDIQQVWRKLQDTGNEIAALAKSLSNMSRTSYSELVGIPAQSTFQDEKQAFYNREFDCRMKPEQTQECVMHKICSCRRCGEKADDTDCLVCDSCEEIYHVSCIEPAVKEIIPHKSWYCANCTANGIGSPHENCVLCERLNDAKTPDDVIGDESFPTIEETQNEFEENSNCTSDGIQVSTGEEKTPNCKICGNEVDGGKIKICGHQFCSNKYYHIRCLTNKQLKSYGHCWYCPSCLCRVCLTDRDDDQIVLCDGCDHAYHTYCMKPPQTSIPRGKWFCRKCDAGIQAIRQAKKAYESKKLRRNGEDAAKPNANLEKKNNNKRVRELESGGLMDMLLTAANTLNFEEKEAAMQIESQRT 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01299 649 ProSiteProfiles Zinc finger PHD-type profile. 525 575 IPR019787 -
Pumo10g01299 649 Pfam PHD-finger 368 415 IPR019787 -
Pumo10g01299 649 Pfam PHD-finger 528 573 IPR019787 -
Pumo10g01299 649 SUPERFAMILY FYVE/PHD zinc finger 357 414 IPR011011 -
Pumo10g01299 649 FunFam PHD finger protein EHD3 isoform A 255 417 - -
Pumo10g01299 649 MobiDBLite consensus disorder prediction 590 613 - -
Pumo10g01299 649 Gene3D - 255 417 - -
Pumo10g01299 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 578 IPR013083 -
Pumo10g01299 649 SMART PHD_3 478 527 IPR001965 -
Pumo10g01299 649 SMART PHD_3 367 414 IPR001965 -
Pumo10g01299 649 SMART PHD_3 530 573 IPR001965 -
Pumo10g01299 649 PANTHER OS02G0192300 PROTEIN 282 437 - -
Pumo10g01299 649 SUPERFAMILY FYVE/PHD zinc finger 527 579 IPR011011 -
Pumo10g01299 649 ProSiteProfiles Zinc finger PHD-type profile. 365 416 IPR019787 -
Pumo10g01299 649 SUPERFAMILY FYVE/PHD zinc finger 473 526 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01299 Pumo-Chr10 17048538 17055319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01299 527 595 C2H2 Transcription Factor Family AT3G01460 50.704 8.11e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo10g01299 PHD 1.8e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01299 - - gmx:100795906 1184.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01299 10 17048538 17055319 Pumo10g01299 10 17048538 17055319 ECH
Pumo9g01124 9 33172736 33188204 Pumo10g01299 10 17048538 17055319 PCT