Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01293 ATGCTGCAAGCGGGCCCCGCCGGCGGCTCCGGTGGCCGCACGGTGCTGGTGGGGGTGAAGATGGACTCCCCCAGCAAAGAATTGCTCACGTGGGCTTTGGTCAAAGTTGCGCACCCCGGTGATACCGTGGTTGCTCTGCATGTTCTTGGGAACCATGAAACTGTGAATGGAGATGGGAAATCGTCGCTGCTTTCGCTTGTCAAGGCGTTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTAAAACAGGTGGATCTCAAGCTCAAAATTTGCCGTGGTTCATCAGCGAAGAAAATTTTGGTTCGAGAAGCGAATGGTTACTCTGCAACTCATGTTGTGGTTGGAACTACTCATGGCCTGCATAAAATCCGGTCATCTACCGTTGTAGCTAAGTACTGTGCTAAAAAATTATCCAAGGATTGTTGTGTTCTTGCTGTTGACAATGGGAAAGTTGTGTTCAAGCGTGACAGCTCGCCGCCGAGTGTTGCTAATTTACAAGGAATTGATCGTCACAACAGAAATGGTTTGATTGGTTCAATTCATTGGACACTCGGTAAGAGTACAAAAGTTCTAAGTGATGACAATTCAGGGACTGATGCTGATGAGAAGAAAACTGGCCAGATTTCAGATCACAGTTTGGCTAAGTTTTTTCTGGAATCTACAGAAACTGTTAGAAAACCGAGCTGTTCAATTTGTGGCACAACCCTGGCATTGCCAGACCCTTCTTGCTACCAATCTGCAGAAGGGGTTTCTTGTGATGATTGTAGAGAGAATTCTTTGGCTATAGTGCCTGTGCAACCCACTGTTGCAGCAGAAACGGAATTGAAACCAGGTTGGCCACTACTACACCGCAGAATTTTATCAGACAGGCAATCTGCTGAAAGATCATTGATGCACCCCCAGATCTCTGTGGTCCAGTGGGCAATGAGGTTGCCTTCTAGAAACCTTTCATATGCTGTAGATCGTGATGAAAATCCTAAAATTTGTGATCAAGGTCAAGATCAACCTGCAGCTTTAAATAGTGAAAGTGGTGCTCTTGTTCCAGTAGATGCTGAAATAGGGACCGCTTCTTCGCCTGAACGCAATTCAGGAAACATTCCTAAAGAATTGGAGGGCCTTCATGAGAAATACTCCTCAACTTGCAGATTGTTTGAGTACCAAGAACTTGTATCAGCCACATCGAATTTCTTGCCTGAAAACTTGATTGGGAAAGGAGGAAGCAGTCAGGTTTATAGAGGCTGCCTTCCTGATGGCAAGGAACTTGCCGTCAAGATCCTAAAGCCTTCTGACGATGTATTGACGGAATTTCTTCTGGAAATAGAAATCATCACTACCTTGCATCACAAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGAATGGCAAACTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCACGGTAATAAGAAAAATTCACTTGCATTTGGTTGGTCTGAGAGATATAAGGTTGCAGTGGGTGTTGCCGAGGCTTTGGATTATCTGCATTCTAAAGATGATCAACCTGTGATCCATCGGGATGTAAAGTCATCGAATGTATTATTATCTGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTGGCAAAATGGGCATCAACCTTGTCATCACATATAACCTGCACAGATGTTGCTGGAACCTTCGGTTACCTGGCTCCTGAATACTTCATGTACGGCAAAGTAAATGATAAGATTGATGTCTATGCATTTGGTGTTGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGCCGTGATTATCCTAAAGGCCAAGAGAGTCTTGTTATGTGGGTATGTTCCTGTAGTCCTATCCATGTCCTCATTTATTTCTTATTTCCTAATCATATGTGTTGTGAAAATTATAATAGAAATGCACTTTCGCAGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAGGAAATGGAAAAGATGGTATTGGCAGCCACTCTATGTATCAAACGTGCTCCAAGGGCTAGGCCTCAAATGAGCCTTATCTCAAAGCTCCTTCAAGGTGATGCCGGGGCAATCAAGTGGGCAAGGTTACAAGTTAATGCTTTGGATGCACCCGAAATGCTTGACGAAGAAGCGTGTCCACCTAGTAATATACAGTCACATATAAATCTTGCACTGCTTGACGTGGAGGATGACTCACTCTCCATGTCCATGTGCAGTGTTGAGCAGGGTCTCACTTTGGAGGACTACTTGAGAGGCCGGTGGAGCCGCGCATCAAGCTTTGACTGA 2334 0.4426 MLQAGPAGGSGGRTVLVGVKMDSPSKELLTWALVKVAHPGDTVVALHVLGNHETVNGDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSAKKILVREANGYSATHVVVGTTHGLHKIRSSTVVAKYCAKKLSKDCCVLAVDNGKVVFKRDSSPPSVANLQGIDRHNRNGLIGSIHWTLGKSTKVLSDDNSGTDADEKKTGQISDHSLAKFFLESTETVRKPSCSICGTTLALPDPSCYQSAEGVSCDDCRENSLAIVPVQPTVAAETELKPGWPLLHRRILSDRQSAERSLMHPQISVVQWAMRLPSRNLSYAVDRDENPKICDQGQDQPAALNSESGALVPVDAEIGTASSPERNSGNIPKELEGLHEKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLTEFLLEIEIITTLHHKNIISLLGFCFENGKLLLVYDFLSRGSLEENLHGNKKNSLAFGWSERYKVAVGVAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTLSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISRDYPKGQESLVMWVCSCSPIHVLIYFLFPNHMCCENYNRNALSQASPILNSGKVLQLLDPSLGDNYDHEEMEKMVLAATLCIKRAPRARPQMSLISKLLQGDAGAIKWARLQVNALDAPEMLDEEACPPSNIQSHINLALLDVEDDSLSMSMCSVEQGLTLEDYLRGRWSRASSFD 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01293 777 ProSiteProfiles Protein kinase domain profile. 398 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01293 777 Pfam Protein kinase domain 402 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01293 777 SUPERFAMILY Protein kinase-like (PK-like) 379 699 IPR011009 -
Pumo10g01293 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Pumo10g01293 777 Gene3D Phosphorylase Kinase; domain 1 366 472 - -
Pumo10g01293 777 PANTHER OS08G0249100 PROTEIN 69 711 IPR046958 -
Pumo10g01293 777 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 367 472 - -
Pumo10g01293 777 Gene3D HUPs 12 150 IPR014729 -
Pumo10g01293 777 ProSitePatterns Protein kinases ATP-binding region signature. 404 426 IPR017441 GO:0005524
Pumo10g01293 777 FunFam Lectin-domain containing receptor kinase A4.3 473 623 - -
Pumo10g01293 777 Pfam Universal stress protein family 13 145 IPR006016 -
Pumo10g01293 777 CDD USP_Like 14 148 - -
Pumo10g01293 777 Gene3D Transferase(Phosphotransferase) domain 1 473 708 - -
Pumo10g01293 777 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 124 - -
Pumo10g01293 777 SMART serkin_6 398 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01293 777 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 12 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01293 Pumo-Chr10 16965894 16969649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01293 304 699 Trihelix Transcription Factor Family AT1G68690 36.935 1.33e-70 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo10g01293 Pkinase 5.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01293 - - pcin:129303222 1056.2