Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01290 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGGTGCCTCTGGGAAGATGCATGAATACATCAGCCCCTCCACCACGTTGATTGACGTCCTGGACAGATACCAAAGAGCCTCTGGGAAGACCCTCTGGGACGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAGGACATCACGTCACTGAATTACAAGGAACTGATGGCCCTAGAGGATGCCCTTGAAAACGGCCTCAATGGCGGCAAGATTTTGGAGGAGCAAAATAAGGAACTCAATTTCCTTCTGCAACAGCATTTGGCACTAGAAGGTGTGGGAAACATGCATGGACAATGGATTTGA 501 0.4551 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGGKILEEQNKELNFLLQQHLALEGVGNMHGQWI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01290 166 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo10g01290 166 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo10g01290 166 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pumo10g01290 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo10g01290 166 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo10g01290 166 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo10g01290 166 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo10g01290 166 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo10g01290 166 Pfam K-box region 81 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo10g01290 166 Coils Coil 77 111 - -
Pumo10g01290 166 ProSiteProfiles K-box domain profile. 84 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo10g01290 166 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pumo10g01290 166 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 134 - -
Pumo10g01290 166 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01290 Pumo-Chr10 16922520 16925303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01290 1 133 MADS-box Gene Family AT5G20240 72.180 1.17e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo10g01290 K-box 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01290 K09264 - gmx:100795861 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01290 10 16922520 16925303 Pumo10g01290 10 16922520 16925303 ECH
Pumo9g01151 9 33479304 33483276 Pumo10g01290 10 16922520 16925303 PCT