LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g01279	ATGAGCTTCTTGAGGCCTTCTGCATTGTACAACTTTCTGATCAGTTACCCTGCACTGCGATGGATGCCATGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGATGGGTTCTTCAGGCTTTTCGTGGTTGCGCTTCTGTGGTCTACGTTATCCGAGCTTCGTTTCATACCCTCATCTTCTATGTACCCCACCCTTCGTGTTGGCGATCGAATTATTGTGGAAAAGGCTTCATATTACATCAGGAGTCCAGCTATACATGAGATTGTAACATTTAAGGATCCAAGACAGCCCCCTGGAGAAAATACAGATGCTGTTTTTATTAAGAGAATTGTTGCAAAAGCAGGAGACACTGTTGAGGTTCATCATGGGGCACTCTACATCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCAGAGCCACCAGCATACACATTGCAATTAACTCATGTGCCCAATGGTCATGTTTATGTGTTGGGGGATAATCGTAACAATAGTTATGATTCCCATGAGTGGGGACCACTTCCTATTAAGAACGTAGTTGGAAGATATGTCACTTGCTATCATAGACCAACAAACATTTGA	585	0.4427	MSFLRPSALYNFLISYPALRWMPCQSWGFLRWPGLDGFFRLFVVALLWSTLSELRFIPSSSMYPTLRVGDRIIVEKASYYIRSPAIHEIVTFKDPRQPPGENTDAVFIKRIVAKAGDTVEVHHGALYINGVAQQEDFIAEPPAYTLQLTHVPNGHVYVLGDNRNNSYDSHEWGPLPIKNVVGRYVTCYHRPTNI	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g01279	194	ProSitePatterns	Signal peptidases I signature 3.	156	169	IPR019758	GO:0004252\|GO:0016020
	Pumo10g01279	194	CDD	S26_SPase_I	53	183	IPR019533	GO:0004252\|GO:0006465
	Pumo10g01279	194	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016020
	Pumo10g01279	194	FunFam	Peptidase/ serine-type peptidase	59	188	-	-
	Pumo10g01279	194	Pfam	Signal peptidase, peptidase S26	40	186	IPR019533	GO:0004252\|GO:0006465
	Pumo10g01279	194	SUPERFAMILY	LexA/Signal peptidase	51	188	IPR036286	-
	Pumo10g01279	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pumo10g01279	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	107	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pumo10g01279	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	151	170	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pumo10g01279	194	PANTHER	SIGNAL PEPTIDASE I	37	192	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pumo10g01279	194	NCBIfam	signal peptidase I	41	188	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pumo10g01279	194	Gene3D	Umud Fragment, subunit A	59	191	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g01279	Pumo-Chr10	16801380	16804820	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g01279	62	185	MADS-box Gene Family	AT1G29960	29.600	2.02e-08	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g01279	K03100		-	gmx:100306121	385.956

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g01279	10	16801380	16804820	Pumo10g01279	10	16801380	16804820	ECH