Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01276 ATGTCGACCCAGACTCGCCGTTCGTCGTTTTCGTCTTCAACGACGTCGTCTTTGGCGAAACGCCATGCATCCGCTACCTCCTCAACGACGTCGTCTTTGGCCGGTGCCAAGAAGCGACCACCTCTCTCTAACCTCACCAACACCGTTGCTCACCGCAACTCATCCTCTTCGGTTCCATGCGCAGCTAAAGTTGCGAAGACCAAGAAAGAGGTTGTTCCGGCGTGTTCAGGGAACAAGAGACCCACATTGGCGAATGTTAAACCCGCTAGTGCTGTTGTTTTTCCTAAGGCTAATTCTTTCCCTGTAAAGAATGAAGCTCCTCCTCCTCCTCCTGCATCAGTTGCTACCGTTACTCTTCCTGCTCCGAGCACGGTGGTGGATGTTTCACCTAGTAAATCGGATGCAATGTCGGTTTCTATGGATGAGTCAATGTCTTCTTGTGACTCTTTCAAGAGCCCGGACATTGAATATGTGGACAATAGTGATGTTGCAGCAGTTGATTCAATTGAGAGGAAGACATTCAGCAATCTCAACATTTCTGATTCTACAGAACCAGCAGGGAACATTTGTAGTAGAGACATACTTGTTGAGTTGGAAAAAGGGGACAAATTTGTCAATGTTGATAATAATTACGCGGATCCACAGCTCTGTGCAACCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAATGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGATTGGCTTGTCGAGGTGGCTGAAGAGTATAGACTAGTACCTGATACATTGTATTTGACAGTAAACTACATTGATCGGTATCTTTCAGGGAATGTGATGAACAGACAAAGGTTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATACGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCCTGAATTTTCTCAAGTTCGAAATGACAGCCCCAACAGTAAAATGTTTCTTAAGAAGATTTGTACGTGCAGCTCAAGGAATCGATGAGGTCCCTTCGCTGCAACTAGAGTGCTTGACAAACTACATTGCCGAATTGTCTCTCTTGGAGTACACTATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCTGCAATTTTCCTAGCCAAATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCACATTGCAGCATTACACCCTGTACCAGCCTTCTGATCTGTGTGTTTGTGTAAAGGATCTCCACCGTCTTTGTTGCAACAGCCCTAACTCTAATTTGCCTGCAATTAGGGAGAAATACAGTCAGCACAAGGTAGTAAAACACTTGTCTCATTTCCTCATATACAAAAGAACTCTACCTCTCCCCCTCTTCATCATGTTTGAGCAATTTCTCATATAA 1482 0.4399 MSTQTRRSSFSSSTTSSLAKRHASATSSTTSSLAGAKKRPPLSNLTNTVAHRNSSSSVPCAAKVAKTKKEVVPACSGNKRPTLANVKPASAVVFPKANSFPVKNEAPPPPPASVATVTLPAPSTVVDVSPSKSDAMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSNLNISDSTEPAGNICSRDILVELEKGDKFVNVDNNYADPQLCATFACDIYKHLRASEAKKWPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRRFVRAAQGIDEVPSLQLECLTNYIAELSLLEYTMLCYAPSLIAASAIFLAKFILFPSKKPWNSTLQHYTLYQPSDLCVCVKDLHRLCCNSPNSNLPAIREKYSQHKVVKHLSHFLIYKRTLPLPLFIMFEQFLI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01276 493 SMART cyclin_7 259 343 IPR013763 -
Pumo10g01276 493 SMART cyclin_7 356 444 IPR013763 -
Pumo10g01276 493 ProSitePatterns Cyclins signature. 254 285 IPR006671 -
Pumo10g01276 493 SUPERFAMILY Cyclin-like 212 349 IPR036915 -
Pumo10g01276 493 Pfam Cyclin, N-terminal domain 223 349 IPR006671 -
Pumo10g01276 493 PIRSF Cyclin_A_B_D_E 1 474 IPR046965 GO:0016538|GO:0044772
Pumo10g01276 493 FunFam Mitotic cyclin 6 237 337 - -
Pumo10g01276 493 CDD CYCLIN_AtCycA-like_rpt2 352 465 - -
Pumo10g01276 493 Gene3D - 223 466 - -
Pumo10g01276 493 PANTHER CYCLINS 162 463 IPR039361 -
Pumo10g01276 493 Pfam Cyclin, C-terminal domain 352 467 IPR004367 -
Pumo10g01276 493 Gene3D - 237 350 - -
Pumo10g01276 493 MobiDBLite consensus disorder prediction 1 60 - -
Pumo10g01276 493 SMART Cyclin_C_2 352 476 IPR004367 -
Pumo10g01276 493 CDD CYCLIN_AtCycA_like_rpt1 213 348 - -
Pumo10g01276 493 FunFam Cyclin A1 339 471 - -
Pumo10g01276 493 SUPERFAMILY Cyclin-like 352 467 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01276 Pumo-Chr10 16788625 16792369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01276 4 465 Core Cell Cycle Gene Families AT1G44110 62.607 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01276 K06627 - gmx:547781 812.757