Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01273 ATGGCTAGCCTGACACAACAGCAACCAAGGGTGGTTAATGGAGGTAGCAGCCGCATAGTAGCCGTCAATGTAACCCCTTCTAACAACCTTCCTACACCATCTCATTACGATGCCTCCTCAAATCATGAGAAACCTGGGTGGAAAAAGTTCCTGTCATATGTAGGTCCTGGCTTTCTGGTCTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCAGACCACAAATATGAGCTGCTATGGGTAATACTTATTGGACTCGTGTTTGCACTTATAATTCAATCATTGGCAGCAAATCTCGGCGTAACCACTGGCAAACACCTTTCAGAATTATGTAAAGCCGAATACCCATTATTTGTCAAGTACTGCTTATGGTTATTAGCCGAGCTCGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCTTTGAACATACTCTTCCACATCCCTATATGGGCAGGAGTTCTGGTGACTGGCTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAACTGCTGATATCAATCTTAGTTTTTGTAATGGCTGGATGCTTCTTTGGGGAAATGAGCTACGTAAAACCTCCTGCTTCTGGTGTATTAAAAGGAATGTTTGTGCCAAAACTCAGTGGTCAAGGAGCCACAGGCGATGCTATTGCACTTTTGGGTGCCCTTGTCATGCCGCACAATCTTTTCCTCCACTCTGCTCTGGTGCTGTCTAGAAAAGTACCCAGTTCTGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATGGAAAGTGGATTCGCACTGTTTGTGGCATTTCTAATCAACGTAGCAATGGTTTCTGTGTCCGGAACTGTTTGCTCTGCCGACAATCTTTCTGCAGAAAATGCTGATCAGTGCAGCGATCTTACCCTTAACTCTGCTTCCTTCCTTCTCAAGAATGTTTTGGGACGGTCGAGCTCAACAGTTTATGCCATAGCACTGCTAGCCTCAGGACAAAGTTCAGCTATCACTGGTACCTATGCAGGCCAATACATCATGCAGGGTTTCCTGGACATGAGGATGAAAACATGGATTAGAAACTTTGTGACTAGGTGCATTGCCATAACTCCTAGTCTTATTGTTTCCATCATCGGTGGTTCTGCAGGGGCTGGTCGGCTAATCATCATTGCATCGATGATACTTTCATTCGAGCTTCCATTTGCACTAATTCCACTCCTTAAGTTCAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTATAATTATCATTGTCATCTCATGGATACTAGGCTTTGGGATCATTGGTATCAACGTGTACTACCTCTCTACTGCGTTCGTGGGTTGGCTACTTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATCATAGTGTTTCCTCTAATGGCACTTTATGTTGCCGCAGTAATCTACCTAACATTCAGAAAAGACACTGTTAAGACATATGTTGAGACAAAGAATGAACCAGCAATGCAAACCCACTTGGAAAAGGGGTTTATGGCTAATGGTCAATTAGAGTTGAGTCAAGTTCCCTACAGAGAAGATTTGGCTGATATCCCATTACCACAATAG 1635 0.4446 MASLTQQQPRVVNGGSSRIVAVNVTPSNNLPTPSHYDASSNHEKPGWKKFLSYVGPGFLVSLAYLDPGNMETDLQAGADHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLFVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPIWAGVLVTGCSTLLFLGLQRFGVRKLELLISILVFVMAGCFFGEMSYVKPPASGVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLMESGFALFVAFLINVAMVSVSGTVCSADNLSAENADQCSDLTLNSASFLLKNVLGRSSSTVYAIALLASGQSSAITGTYAGQYIMQGFLDMRMKTWIRNFVTRCIAITPSLIVSIIGGSAGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIIIIVISWILGFGIIGINVYYLSTAFVGWLLHSSLPKVANVFIGIIVFPLMALYVAAVIYLTFRKDTVKTYVETKNEPAMQTHLEKGFMANGQLELSQVPYREDLADIPLPQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01273 544 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 PRINTS Natural resistance-associated macrophage protein signature 402 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 Pfam Natural resistance-associated macrophage protein 71 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 Hamap Divalent metal cation transporter MntH [mntH]. 33 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 48 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 40 502 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01273 544 NCBIfam Nramp family divalent metal transporter 55 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01273 Pumo-Chr10 16740523 16744633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01273 32 544 Inorganic Solute Cotransporters AT1G15960 61.702 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01273 K21398 - gmx:100787785 1016.53