Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01272 ATGGCTAGCCTCATACAACAACAAGCAAAAGGAGTTAATGGAGATAGCAACTGCATAGTAGCCGTCAATGTGACCTCCTCTAACAACCTTCCTATACCATCTCACTATGATGCCTCCTCAAATAACGAGAAACCTGGGTGGAAAAAGTTCCTGTCATATGTAGGTCCTGGCTTTCTGGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACCGATTTGCAAGCTGGAGCTGACCACAAATATGAGCTGCTGTGGGTAATACTTATTGGACTGGTGTTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTAACCACTGGCAAACACCTTTCAGAATTATGTAAAGCGGAATACCCATTAGTGGTTAAGTACTGCTTATGGTTATTAGCCGAGCTCTCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCTTTGAACATACTCTTCCACATCCCTGTATGGGCAGGAGTTCTGGCGACTGGCTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAATTGCTGATATCAATCTTAGTTTTTGTAATGGCTGGATGCTTCTTTGGGGAGATGAGCTACGTAAAACTTCCTGCTTCTGGTGTATTGAAAGGAATGTTCGTGCCAAAACTCAGTGGTCAAGGAGCTACAGGCGATGCTATCGCCCTTTTGGGTGCCATTGTCATGCCATTGTTGACAAAATGCAGGCACAATCTTTTCCTCCACTCTGCTCTGGTGCTGTCTAGAAAAATACCTAGTTCTGTGCATGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGGTTCGTGCTGTTTGTGGCATTTCTAATCAATGTTGCAATGATTTCTGTGTCCGGAACTGTTTGCTCTGCAGACAATCTTTCTGCAGAAAATGCTCATAACTGCAGCAATCTTACCCTTAACTCTGCTTCCTTCCTTCTCAAGAATGTGTTGGGACAGTCGAGCTCAACCATTTATGCCATAGCACTGCTAGCCTCAGGACAAAGTTCAGCTATCACAGGAACCTATGCAGGGCAATACATCATGCAGGGTTTCTTGGACATGAGGATGAAAAAATGGATTAGAAACTTTGTGACTAGGTGCATTGCCATAACTCCTAGTCTTATTGTTTCCATCATCGGGGGTTCTGCAGGGGCTGGTCGGCTTATCATCATTGCATCAATGATACTTTCATTCGAGCTTCCATTCGCATTAATTCCACTCCTTAAGTTCAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTATAATTATCGTTGTCATCTCATGGATACTAGGCCTGGGGATCATTGGTACCAACGTGTACTACCTCTCTACTGCATTCGTGGGTTGGCTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATCATAGTGTTTCCTCTAATGGCACTTTATGTTGCCGCAGTAATCTACCTAACATTCAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAATGAACCAGCAATGCAAACCCACTTGGAAAAGGGGTTTATGGCTAATGGTTAA 1593 0.4375 MASLIQQQAKGVNGDSNCIVAVNVTSSNNLPIPSHYDASSNNEKPGWKKFLSYVGPGFLVSLAYLDPGNMETDLQAGADHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLVVKYCLWLLAELSVIAADIPEVIGTAFALNILFHIPVWAGVLATGCSTLLFLGLQRFGVRKLELLISILVFVMAGCFFGEMSYVKLPASGVLKGMFVPKLSGQGATGDAIALLGAIVMPLLTKCRHNLFLHSALVLSRKIPSSVHGINDACRYFLIESGFVLFVAFLINVAMISVSGTVCSADNLSAENAHNCSNLTLNSASFLLKNVLGQSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDMRMKKWIRNFVTRCIAITPSLIVSIIGGSAGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIIIVVISWILGLGIIGTNVYYLSTAFVGWLIHSSLPKVANVFIGIIVFPLMALYVAAVIYLTFRKDTVKTYIETKNEPAMQTHLEKGFMANG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01272 530 Pfam Natural resistance-associated macrophage protein 71 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 48 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 Hamap Divalent metal cation transporter MntH [mntH]. 33 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 PRINTS Natural resistance-associated macrophage protein signature 348 367 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 PRINTS Natural resistance-associated macrophage protein signature 408 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 PRINTS Natural resistance-associated macrophage protein signature 376 393 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g01272 530 NCBIfam Nramp family divalent metal transporter 55 427 - -
Pumo10g01272 530 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 40 506 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01272 Pumo-Chr10 16731101 16736449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01272 7 529 Inorganic Solute Cotransporters AT1G15960 59.506 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01272 K21398 - gmx:100787785 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01272 10 16731101 16736449 Pumo10g01272 10 16731101 16736449 ECH