Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01261 ATGGAGTTTGTGGATACCAGAAAACTACAGTTACAACAACAGCCGCAACCGCAGCAGCAGCAGCAACATTTTCATGTGTTGGCAGTGGACGACAGTGTCATAGATAGGAAGCTTTTGGAGAGGCTCCTTAGAGGTTCTTCATGCAAAGTTACCTGCGTGGACTCTGGAGACAAGGCTTTGAAATATCTTGGGCTAATTGATGACCTTGATGATACTTCTTCAACATCTTTAGAATCAGCATCTTCTCCTCCACCTCAACCATTACAGCAAGAGGGAATCAAAGTGAATTTGATCATGACAGACTATTGCATGCCTGGGATGAGTGGCTATGATTTACTCAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTCGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGCTTAGAAGGAGGGGCAGAAGAGTTTCTATTGAAGCCTCTTCAGTTATCGGATTTGGATAAGCTTCAGCCGTACTTTCTGAAATCCCTTGATAACTCCTTGGAAGAAGAATCTGCTAACAGTTCCATAGATTTGGATCACAATGACAATGTCATCAACAACAATAACAGTAACAATAACAATAATAGTATTAGCAAAAGGAAGGCCATGTCTCCTGAGCCTCATCAGGAGGAGAGATCAAGACCCAAAATGAAAGAGTTAGCGGTGGTGTAA 693 0.4214 MEFVDTRKLQLQQQPQPQQQQQHFHVLAVDDSVIDRKLLERLLRGSSCKVTCVDSGDKALKYLGLIDDLDDTSSTSLESASSPPPQPLQQEGIKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRISMCLEGGAEEFLLKPLQLSDLDKLQPYFLKSLDNSLEEESANSSIDLDHNDNVINNNNSNNNNNSISKRKAMSPEPHQEERSRPKMKELAVV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01261 230 SMART REC_2 24 163 IPR001789 GO:0000160
Pumo10g01261 230 MobiDBLite consensus disorder prediction 181 209 - -
Pumo10g01261 230 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g01261 230 Pfam Response regulator receiver domain 94 160 IPR001789 GO:0000160
Pumo10g01261 230 ProSiteProfiles Response regulatory domain profile. 25 167 IPR001789 GO:0000160
Pumo10g01261 230 MobiDBLite consensus disorder prediction 181 230 - -
Pumo10g01261 230 SUPERFAMILY CheY-like 24 162 IPR011006 -
Pumo10g01261 230 CDD REC_typeA_ARR 26 162 - -
Pumo10g01261 230 Gene3D - 25 226 - -
Pumo10g01261 230 MobiDBLite consensus disorder prediction 210 230 - -
Pumo10g01261 230 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 216 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01261 Pumo-Chr10 16578735 16581781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01261 21 184 Response Regulator Gene Family AT3G57040 57.485 4.60e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo10g01261 Response_reg 3.1e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01261 K14492 - gmx:100801334 345.51