Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01254 ATGGCGGATACGAACCATCCCATGGACATCGACAGCGACGACCACACTTACACCGCGAGGCCCGACAAGGGCAAAAGTGTCGTCGCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATACCGCCCTCAGTCCCTCGACGATGTCGCCGCCCACCGTGACATTGTCGATACCATTGATAGGCTGACCACTGAGAACAGATTGCCCCATCTTCTATTGTATGGTCCTCCTGGCACGGGCAAAACGTCAACAATTCTCGCTGTGGCACGCAAACTGTATGGTTCACAGTACCACAATATGATTTTGGAGCTCAATGCATCAGATGATAGAGGAATTGATGTTGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTCAAGTCCTCTGTAAAACTGGTATTGTTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCCGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCCGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAAATGAAGACAAGGAAAGGGTTGGCCCTGGTTGATATTGTCAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTGCAGTTGATGAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCAGTTATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTACATAG 1074 0.4441 MADTNHPMDIDSDDHTYTARPDKGKSVVAAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01254 357 Pfam ATPase family associated with various cellular activities (AAA) 70 190 IPR003959 GO:0005524|GO:0016887
Pumo10g01254 357 FunFam Replication factor C subunit 5 258 355 - -
Pumo10g01254 357 FunFam Replication factor C subunit 5 195 257 - -
Pumo10g01254 357 Gene3D - 28 192 IPR027417 -
Pumo10g01254 357 Gene3D - 196 257 - -
Pumo10g01254 357 Gene3D - 258 355 - -
Pumo10g01254 357 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 35 339 - -
Pumo10g01254 357 MobiDBLite consensus disorder prediction 1 24 - -
Pumo10g01254 357 MobiDBLite consensus disorder prediction 1 21 - -
Pumo10g01254 357 SUPERFAMILY post-AAA+ oligomerization domain-like 258 348 IPR008921 GO:0003677|GO:0006260
Pumo10g01254 357 FunFam Replication factor C subunit 5 28 193 - -
Pumo10g01254 357 SMART AAA_5 66 196 IPR003593 GO:0016887
Pumo10g01254 357 Pfam Replication factor C C-terminal domain 258 344 IPR013748 -
Pumo10g01254 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 251 IPR027417 -
Pumo10g01254 357 CDD HLD_clamp_RFC 193 255 - -
Pumo10g01254 357 CDD AAA 54 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01254 Pumo-Chr10 16433861 16440519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01254 1 356 Core DNA Replication Machinery Family AT1G77470 78.591 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01254 K10756 - gmx:100805231 676.011