Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo10g01252 | ATGCCCCAAAGAAATCTCAAAAACTATGATTCTATATTCATCCACTCAAATACCCCAATTGCATTGATCTGTTCTCAATCCACCAACTGCATTGGAACACCCTTTTCTCCTTCGATGGAAGGTGAGGAGGGGAAACAGTTTTTCCACAAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTTGATTTTATTCTAGCAATGAGCATGCAAGAACAAGAGAGAGAGTTCACAATGCTTTCAACTATTGAAAGTGAAAGTGATGAATTTCTAAGTGACTCCTCTTTTGATAATGATAATGATGGTGATCCTGACATTTCAGAGAACCAAGAGTTTGAAACCAACCTTCGGTTTCTTCAGTTTCTTGAAGGTGAAGGAAGCAACGATGATGATGATGAAGAAATGGAAGTGGAAGAAGATGAAACTGATCCAGATGAATTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTTATAGGAGAAGAAACAAGAGGGTTATCAGCAAATGAAATCTCTTTGTGCTTGTACCCTTATACTTGCCAATGTGCTGAAAGCAAAAATGGCATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCACTGGTGGCACTTCAATGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCCAACGTTGCTTCGAATCCGTAG | 735 | 0.3891 | MPQRNLKNYDSIFIHSNTPIALICSQSTNCIGTPFSPSMEGEEGKQFFHKNPYVELEEVDFDFILAMSMQEQEREFTMLSTIESESDEFLSDSSFDNDNDGDPDISENQEFETNLRFLQFLEGEGSNDDDDEEMEVEEDETDPDELSYEELMELGEFIGEETRGLSANEISLCLYPYTCQCAESKNGIDRCVICQVEYEEGEALVALQCEHPYHADCISKWLQIKKVCPICSNEVSTPNVASNP | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo10g01252 | 244 | SMART | ring_2 | 191 | 231 | IPR001841 | - | |
Pumo10g01252 | 244 | MobiDBLite | consensus disorder prediction | 124 | 144 | - | - | |
Pumo10g01252 | 244 | MobiDBLite | consensus disorder prediction | 87 | 107 | - | - | |
Pumo10g01252 | 244 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 241 | IPR013083 | - | |
Pumo10g01252 | 244 | ProSiteProfiles | Zinc finger RING-type profile. | 191 | 232 | IPR001841 | - | |
Pumo10g01252 | 244 | FunFam | E3 ubiquitin ligase BIG BROTHER-related | 157 | 238 | - | - | |
Pumo10g01252 | 244 | SUPERFAMILY | RING/U-box | 190 | 238 | - | - | |
Pumo10g01252 | 244 | MobiDBLite | consensus disorder prediction | 89 | 107 | - | - | |
Pumo10g01252 | 244 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 48 | 135 | IPR043312 | - | |
Pumo10g01252 | 244 | Pfam | Ring finger domain | 190 | 231 | IPR001841 | - | |
Pumo10g01252 | 244 | MobiDBLite | consensus disorder prediction | 123 | 144 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo10g01252 | Pumo-Chr10 | 16415331 | 16416244 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo10g01252 | 126 | 235 | C3H Transcription Factor Family | AT3G63530 | 45.614 | 2.93e-27 | 103 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo10g01252 | K19045 | - | gmx:100526881 | 319.316 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo10g01252 | 10 | 16415331 | 16416244 | Pumo9g01181 | 9 | 35412345 | 35413172 | PCT |