Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01252 ATGCCCCAAAGAAATCTCAAAAACTATGATTCTATATTCATCCACTCAAATACCCCAATTGCATTGATCTGTTCTCAATCCACCAACTGCATTGGAACACCCTTTTCTCCTTCGATGGAAGGTGAGGAGGGGAAACAGTTTTTCCACAAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTTGATTTTATTCTAGCAATGAGCATGCAAGAACAAGAGAGAGAGTTCACAATGCTTTCAACTATTGAAAGTGAAAGTGATGAATTTCTAAGTGACTCCTCTTTTGATAATGATAATGATGGTGATCCTGACATTTCAGAGAACCAAGAGTTTGAAACCAACCTTCGGTTTCTTCAGTTTCTTGAAGGTGAAGGAAGCAACGATGATGATGATGAAGAAATGGAAGTGGAAGAAGATGAAACTGATCCAGATGAATTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTTATAGGAGAAGAAACAAGAGGGTTATCAGCAAATGAAATCTCTTTGTGCTTGTACCCTTATACTTGCCAATGTGCTGAAAGCAAAAATGGCATTGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCACTGGTGGCACTTCAATGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCCAACGTTGCTTCGAATCCGTAG 735 0.3891 MPQRNLKNYDSIFIHSNTPIALICSQSTNCIGTPFSPSMEGEEGKQFFHKNPYVELEEVDFDFILAMSMQEQEREFTMLSTIESESDEFLSDSSFDNDNDGDPDISENQEFETNLRFLQFLEGEGSNDDDDEEMEVEEDETDPDELSYEELMELGEFIGEETRGLSANEISLCLYPYTCQCAESKNGIDRCVICQVEYEEGEALVALQCEHPYHADCISKWLQIKKVCPICSNEVSTPNVASNP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01252 244 SMART ring_2 191 231 IPR001841 -
Pumo10g01252 244 MobiDBLite consensus disorder prediction 124 144 - -
Pumo10g01252 244 MobiDBLite consensus disorder prediction 87 107 - -
Pumo10g01252 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 241 IPR013083 -
Pumo10g01252 244 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Pumo10g01252 244 FunFam E3 ubiquitin ligase BIG BROTHER-related 157 238 - -
Pumo10g01252 244 SUPERFAMILY RING/U-box 190 238 - -
Pumo10g01252 244 MobiDBLite consensus disorder prediction 89 107 - -
Pumo10g01252 244 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 48 135 IPR043312 -
Pumo10g01252 244 Pfam Ring finger domain 190 231 IPR001841 -
Pumo10g01252 244 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01252 Pumo-Chr10 16415331 16416244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01252 126 235 C3H Transcription Factor Family AT3G63530 45.614 2.93e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01252 K19045 - gmx:100526881 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01252 10 16415331 16416244 Pumo9g01181 9 35412345 35413172 PCT