Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01227 ATGGTTAAGTCAGAGCACAAGATCAAAACAGAACCACCATCAAAGGCAATGCGGTCTTTATCCTCAGCATCAGCATCAACATCAGATAGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGTTCATGGGTGTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCCCAGAGGCTGCAGCTAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCAAATCTTAATTTCCCTTTAAGCTCTTCACAACAATACATTCCTGGAGATGCTGTCATGTCCCCCAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCAAATAGTTTCATTGACAATGCCACCCTTCCCCCTTCCCCACCTCCAGCTTCAACCTCATCATCATCATTGGTCTCATCCCCCTCAGTGGCCTCATCTCCCTTGGATCAAATTGACGATGACGCCTCGCTGATATCATCCTTTGAGGCCTACACTAGTTGTGATCAAGCAAATCAATCAATGGCTGTGAATGTGATGGAGCCTTGGTACACCTTTGGGGATGGTCTACAATCCCCTAAGTATGTTGATCAGATGTTAAGTGGTGCTTTCTTTGATGTTGATTCGTCCCATCTGCTTGATGATCTATATGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCTGA 696 0.4526 MVKSEHKIKTEPPSKAMRSLSSASASTSDSKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLSSSQQYIPGDAVMSPKSIQRVAAAAANSFIDNATLPPSPPPASTSSSSLVSSPSVASSPLDQIDDDASLISSFEAYTSCDQANQSMAVNVMEPWYTFGDGLQSPKYVDQMLSGAFFDVDSSHLLDDLYEESDIRLWSFC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01227 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 171 - -
Pumo10g01227 231 MobiDBLite consensus disorder prediction 136 150 - -
Pumo10g01227 231 MobiDBLite consensus disorder prediction 1 37 - -
Pumo10g01227 231 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Pumo10g01227 231 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
Pumo10g01227 231 MobiDBLite consensus disorder prediction 125 150 - -
Pumo10g01227 231 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Pumo10g01227 231 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Pumo10g01227 231 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Pumo10g01227 231 FunFam ethylene-responsive transcription factor ERF014-like 33 93 - -
Pumo10g01227 231 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Pumo10g01227 231 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Pumo10g01227 231 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01227 Pumo-Chr10 16048880 16050576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01227 1 230 AP2-EREBP Transcription Factor Family AT1G21910 47.451 3.73e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g01227 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01227 - - gmx:100819512 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01227 10 16048880 16050576 Pumo10g01227 10 16048880 16050576 ECH