Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01225 ATGTCATTGAGTCCTCCCAGAGAGAGAAACAATGGGCAAGCGAGGACGTTCCAGCTGTACTGGTGCTTCCAGTGCAACCGCACGGTCCGAGCCGAACCCGATAATAACAACCCCAACGAGGTCTCGTGCCCGCGCTGCTTCGGCCAATTCATCTGCGAAATAAACATGCCGCATCCAAGACTCGTCGTGGACTTCACCACACCAGATCCCTCCCCAGAAGCGCGTTTGCTAGAAGCACTTTCCCTCATGATGGACCCACCCATCCGCCGCTTCCCGGGTCTCATCCAACCCGAACCCGGAGAAATCCCCGTGCACCTCCGACGCCGCCGCCGCCGCCACCAGCCCGAACCCGAACCCGAGCCCCACCACCGCCCTCGCACCTGGATCGTTTTCCAGCCCATGGATCCATCCAATCCCTTCGACCCCATTAACTTTCCAAACCGACCCGGCCCGGGCCCACTCCCGCGCGGTGTGAGCGCGCGAGATTACTTCTTCGGGCCAGGGCTCAACGAACTCATCGAACAGATAACGGAAAATGACCGGCCGGGTCCGGGGCCGGCGCCGGAGAGGGCGATCGAGGCGATTCCGACGGTGAAAATCGCGAGCGCGCATCTAAAGGAGAATTCTCAGTGCCCAGTGTGTCAGGAGGAATTCGAAGTGGGTGGAGAAGCGCGGGAACTTCAATGCAAACACATATATCACTCTGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGCCCCGTGTGCCGCCACGAGGTGCCGGTGCCGTCTTCGGAGGACGATGAATGCGTTGCTGATGGTCGAGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACTCGTCGTTTTACTTCGCTTTGGCCTTTCAATCGACGGGTTCACCCTCAGGGAAATAATAGTGTTGCTGCTGCTTCTTCAAGGGGACATTCTCCATCTAACAGTCCCACATTATTCTCTCGAGGTAATCGGAGGCAGCCCTCTTGCTGCATTCTTTAA 999 0.5776 MSLSPPRERNNGQARTFQLYWCFQCNRTVRAEPDNNNPNEVSCPRCFGQFICEINMPHPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLIQPEPGEIPVHLRRRRRRHQPEPEPEPHHRPRTWIVFQPMDPSNPFDPINFPNRPGPGPLPRGVSARDYFFGPGLNELIEQITENDRPGPGPAPERAIEAIPTVKIASAHLKENSQCPVCQEEFEVGGEARELQCKHIYHSDCIVPWLRLHNSCPVCRHEVPVPSSEDDECVADGREGRLRRCLRWTRRFTSLWPFNRRVHPQGNNSVAAASSRGHSPSNSPTLFSRGNRRQPSCCIL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01225 332 SUPERFAMILY RING/U-box 191 258 - -
Pumo10g01225 332 MobiDBLite consensus disorder prediction 298 327 - -
Pumo10g01225 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 258 IPR013083 -
Pumo10g01225 332 Pfam zinc-ribbon 18 54 IPR039525 GO:0061630
Pumo10g01225 332 FunFam E3 ubiquitin-protein ligase RING1-like 174 258 - -
Pumo10g01225 332 SMART ring_2 211 251 IPR001841 -
Pumo10g01225 332 Pfam Ring finger domain 210 252 IPR001841 -
Pumo10g01225 332 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Pumo10g01225 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 118 256 - -
Pumo10g01225 332 MobiDBLite consensus disorder prediction 298 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01225 Pumo-Chr10 16038484 16041672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01225 183 290 C3H Transcription Factor Family AT1G68180 47.273 2.27e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01225 K11982 - gmx:100787399 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01225 10 16038484 16041672 Pumo10g01225 10 16038484 16041672 ECH