Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01220 ATGTCTCAAATCTGCACTTCATCAAATTACACCATGAAACCTATCATAACTTTCTCTTGCATTTTCCTTTTGTTTACTACCATCTCGGCTTACACTTTTTCAGATTATATCACTCCAAATTTCACTGCCTCATATCTTGGGTTCATTGACAACTTTGGCACGTTCCTCTTGTCTCACAACAGAACATTCAAGGCTGCTATATTCAACCCCGGTGGTCAACAAACCAGTTTCTACCTTTGTGTCATTCATGCAGCGTCCAACACTATCATTTGGTCTGGTAACCGTGATGCTCCCATCTCAGATTCTGGCAAAATGCTTCTAACTTTCAAAGGGATCACAATTCTTGATGAAGATGGGAACACCAAATGGTCAACACCATCACTGAAATCACAAGTAAATAGGCTTGTGCTGACCGAGATGGGAAATCTTGTGTTACTTGATAAGTCCAATGGTTCTCTCTGGGAGAGTTTCCAAAACCCAACTGACACAATTGTTATTGGACAGCGTTTACCTGTTGGAGCATCTTTGTCAAGTGCGGCATCCAATTCAGACTTGTCAACAGGAAATTACAAGCTCACAATAACTTCCTCTGATGCAGTACTGCAATGGTATGGACAGACATTCTGGAAGCTTTCAACGGATACAAAAGTCTACAAGAATTCAAATGACATGGTGGAATACATGGCCATAAACAACACAGGTTTTTATGTATTTGGAGATGGTAGAACAGTTTTTCATCTGGGATTGCCACTGGCTAATTTTCGAATTGCCAAGTTGGGTACCTCTGGCCAGTTCACTATCAACAGCTTTTCTGACACTAACTTGAAGCAGGAGTTTGTGGGGCCAGATGATGGTTGTCAAACTCCCTTACCTTGTGGAAGAGCAGGTTTATGCACTGAGAACACTGTTTCCTCTTCACCTGTTTGTTCTTGTCCCCCAAACTTCCATGTAGGCTCAGGTACTTTTGGTGGTTGTGTGCCAAGCAATGGATCCTATTCTTTGCCACTTGCTTGTAAAAATTCTTCAGTTGTTTCATTTCTGAATATAGGGTATGTTGAGTACTTTGGCAATTTTTATTCTGATCCGGTTATGTATAATGGGAATTTATCTGCCTGTCAAAATCTTTGTTCAAGTAACTGTTCCTGCTTGGGAATTTTCTATAAAAACACATCTGGTTCTTGTTACGTGATTGAGACTGAGTTGGGGTCCATTCAGTCAAGTAATGGAGGTGAAAGAGACATGTTGGGGTTCATTAAAGCTATTATTGTTGCATCTACAAGTAGCAATGGTGATGGTAGTGATGATAAGCAAAGTTCTCAAAATGGGGGGTTTCCTGTGGCAGTTGCGGTGCTGTTACCTATTATTGGATTCATTATTTTGATGGTCATATTTTTCCTTCTGTGGAGAAGATTGACACTCATGTCAAAGATGAAAGAAGTGAAACTAGGGAAAAACTCACCTTTTTCTGGGGACCTTGATGCCTTCTACATTCCTGGCTTACCTGCAAGGTTTGACTATGAAGAGCTTGAGGAGGCTACAGATAACTTCAAGACTCTAATAGGGTCAGGTGGGTTTGGAGCTGTATACAAAGGTGTGCTTCCTGATAAATCTGTTGTGGCAGTAAAGAAAATAGTGAACATAGGCATTCAAGGGAAGAAAGATTTCTGCACTGAGATTGCTGTCATTGGAAACATCCACCATGTGAATTTGGTCAAACTGAAAGGCTTTTGTGCTCAAGGGAGACACCGCTTGTTGGTTTATGAGTACATGAACCGTGGATCCCTTGACCGAAACCTCTTTGGTGGTGGACCCGTTTTGGAATGGCAAGAGCGGTTCGATGTGGCGCTTGGAACAGCACGTGGACTTGCTTACCTTCACAGTGGATGTGAGCAAAAGGTTATCCATTGTGACATCAAACCCGAGAACATTCTCTTGCAGGATCAGTTTCAGGCTAAGATATCTGATTTTGGACTCTCCAAACTCCTCAGCCCTGAACAGTCTGGTTTGTTCACAACAATGAGAGGCACACGTGGCTATCTTGCTCCAGAGTGGCTCACCAACTCTGCCATTACAGAAAAAACTGATGTCTATAGCTTTGGAATGGTGCTTCTTGAACTTGTCAGTGGAAGGAAGAATTGTTATTATAGATCCAGAAGCCATAGCATGGATGATAGCAACAGTGGTGGAGGCCATTCCTCAACCTCATCAACAACTGGGTTGATTTATTTTCCTCTATTTGCATTGGAGATGCATGAGCAAAAGAGTTATCTGGAGTTGGCTGATGCAAGGCTAGAAGGACGTGTTACATCTGAAGAGGTGGAGAAACTGATTCGCATTGCCTTGTGTTGCGTTCATGAAGAACCAGCACTTAGGCCAAACATGGTCACTGTTGTTGGCATGTTGGAAGGTGGGACTCCATTGCCACACCCGAGGATAGAATCTTTGAACTTCCTGCGGTTTTATGGCCGTAGGTTTACCGAGGCTTCCACTATAGCGGAAGAAAATGAGTATGGTTCTGCGATGCATCAACAAGCACGTAGTTCTACAAGCATGCCAAGTGATTCACCGACTCGTGGTTTTTCTTACATATCTTCACAAACTATCTCAGGGCCAAGATAG 2619 0.4257 MSQICTSSNYTMKPIITFSCIFLLFTTISAYTFSDYITPNFTASYLGFIDNFGTFLLSHNRTFKAAIFNPGGQQTSFYLCVIHAASNTIIWSGNRDAPISDSGKMLLTFKGITILDEDGNTKWSTPSLKSQVNRLVLTEMGNLVLLDKSNGSLWESFQNPTDTIVIGQRLPVGASLSSAASNSDLSTGNYKLTITSSDAVLQWYGQTFWKLSTDTKVYKNSNDMVEYMAINNTGFYVFGDGRTVFHLGLPLANFRIAKLGTSGQFTINSFSDTNLKQEFVGPDDGCQTPLPCGRAGLCTENTVSSSPVCSCPPNFHVGSGTFGGCVPSNGSYSLPLACKNSSVVSFLNIGYVEYFGNFYSDPVMYNGNLSACQNLCSSNCSCLGIFYKNTSGSCYVIETELGSIQSSNGGERDMLGFIKAIIVASTSSNGDGSDDKQSSQNGGFPVAVAVLLPIIGFIILMVIFFLLWRRLTLMSKMKEVKLGKNSPFSGDLDAFYIPGLPARFDYEELEEATDNFKTLIGSGGFGAVYKGVLPDKSVVAVKKIVNIGIQGKKDFCTEIAVIGNIHHVNLVKLKGFCAQGRHRLLVYEYMNRGSLDRNLFGGGPVLEWQERFDVALGTARGLAYLHSGCEQKVIHCDIKPENILLQDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELVSGRKNCYYRSRSHSMDDSNSGGGHSSTSSTTGLIYFPLFALEMHEQKSYLELADARLEGRVTSEEVEKLIRIALCCVHEEPALRPNMVTVVGMLEGGTPLPHPRIESLNFLRFYGRRFTEASTIAEENEYGSAMHQQARSSTSMPSDSPTRGFSYISSQTISGPR 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01220 872 CDD PAN_AP_plant 335 419 - -
Pumo10g01220 872 Gene3D Phosphorylase Kinase; domain 1 496 589 - -
Pumo10g01220 872 FunFam Serine/threonine-protein kinase 590 809 - -
Pumo10g01220 872 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 52 809 - -
Pumo10g01220 872 PIRSF SRK 7 854 IPR024171 GO:0004674
Pumo10g01220 872 CDD STKc_IRAK 520 803 - -
Pumo10g01220 872 Pfam Protein kinase domain 517 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01220 872 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 212 IPR036426 -
Pumo10g01220 872 ProSitePatterns Protein kinases ATP-binding region signature. 520 543 IPR017441 GO:0005524
Pumo10g01220 872 SUPERFAMILY Protein kinase-like (PK-like) 492 801 IPR011009 -
Pumo10g01220 872 Pfam D-mannose binding lectin 88 171 IPR001480 -
Pumo10g01220 872 ProSiteProfiles Bulb-type lectin domain profile. 41 158 IPR001480 -
Pumo10g01220 872 SMART serkin_6 514 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01220 872 SMART blect_4 47 160 IPR001480 -
Pumo10g01220 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Pumo10g01220 872 Gene3D - 51 169 - -
Pumo10g01220 872 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Pumo10g01220 872 FunFam serine/threonine-protein kinase PBS1-like 489 589 - -
Pumo10g01220 872 CDD B_lectin 53 160 IPR001480 -
Pumo10g01220 872 ProSiteProfiles Protein kinase domain profile. 514 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01220 872 Gene3D Transferase(Phosphotransferase) domain 1 590 806 - -
Pumo10g01220 872 MobiDBLite consensus disorder prediction 836 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01220 Pumo-Chr10 15944607 15947554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01220 458 810 Receptor kinase-like Gene Family AT5G20050 40.162 4.68e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo10g01220 Pkinase 9.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01220 - - gmx:100305399 1371.68