Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01197 ATGCTCTGCTTCTTGTGTACCTTGTTGTTGCCGACGATGACCGGGGACCGATGTCACCCGTGGGAGGGCATAGCGGAGGAAGGGGATGCCGCCGCCGTGGAGAGGCCGTGCCAGTCTAATTTTCCGGCGGAAATTCCTCGCGTCTCTGCCGTGCGTGAAATTGATTACTTGTCCCAGGCCAGGAAAGCGCTTGCGGAGCGTTCGCCGTTCGATGTTGCTGAAGAAACGTCGACTTCCGCTGCGGTTACTCTGCCCAGTAGGTTGGCTAGTTTGCTGAACCGGCAGGGTGATAACCGGAGGCGTCCCAAGAAGTCTCATTCTGGCGGAAATAAGAGGAAATCTTCGAATAGGGTAAACCAGAAGAAGCCGGAGGACTCTAACATTTGGGTTGAGACGGAGGAGTACTTTAGGGACTTGACCTTGGCTGATATTGACACCTTGTTTGAGGCCTCTCGCACTTCTAGTTTAGTGTCTCAGGACTGTTTCTCCATCCCGTGTTTGGGGAATGCTCCTAGGTACAATGCAGTTACTAGTAATAGTGGGAATGAAATGGAGCCTGTTCCAAAATTCAATGTAGTAGTTAGTAGTGAGGATGATAAAAAGGGTGAGGATGAAAAGGAGGGTGGTGAAGTGGTGGAAAACGAGGATGAATTGTTGGTAATTGAGGCAATTGATGATGTTGCTGTTGAACAAGTTCTTCCTCAGGATGACAAGAGTCAGGATATTTCTGATTCTTCTGTTAGTTTAGAGTGGTTTTTAGGTTGTAGAAATAAGGTTTCATTGACTTCTGAGCGCCCTACCAAGAAAAGGAGGCTTTTGGGTGTTGAAGCTGGTTTGGAGAAAGCTATAATGACTTGTCCTTGTGATGAGGGCCAACTGTGTTGCCATTATTGTGGCAGGGGAGACACTGGCAGAGATTCCAATAGGTTAATTGTCTGTGCTTCTTGTAAAGTGGCAGTTCACCGGAAGTGCTATGGCATGCATGATGATGTAGACGAGGCTTGGCTGTGCAGCTGGTGCAAGCAAAAGGGTGATGTTGATGAATCGGTGAATCCTTGTGTTCTTTGCCCAAAGAAGGGTGGCGCATTAAAACCAGTTAATAGCAGTGCGGAAGGTGCGGGGTCTGTCTCATTTGTGCACTTGTTTTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATTTGAAGAAGATGGAACCTGTTATGAATGTGGGAGAAATCAAGGAAACCCGGAAGAAATTAGTGTGTAGTGTTTGTAAAACAAAGTGTGGTGCATGTGTTCGGTGTAGCCATGGAAGCTGCAGAGCTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACCAGAAAACGGAAGCATCTTGCCATTGGAAGGCTCTATCGCGGTTAGAAATGATGTTTCAGAAGCCAATGGACTTCCAGTGACATTGGCAGTGAGTGATGAAGCAGAACTTGAAAGATTGCAGGAATGGAGGATTAGCCTCTGA 1563 0.4709 MLCFLCTLLLPTMTGDRCHPWEGIAEEGDAAAVERPCQSNFPAEIPRVSAVREIDYLSQARKALAERSPFDVAEETSTSAAVTLPSRLASLLNRQGDNRRRPKKSHSGGNKRKSSNRVNQKKPEDSNIWVETEEYFRDLTLADIDTLFEASRTSSLVSQDCFSIPCLGNAPRYNAVTSNSGNEMEPVPKFNVVVSSEDDKKGEDEKEGGEVVENEDELLVIEAIDDVAVEQVLPQDDKSQDISDSSVSLEWFLGCRNKVSLTSERPTKKRRLLGVEAGLEKAIMTCPCDEGQLCCHYCGRGDTGRDSNRLIVCASCKVAVHRKCYGMHDDVDEAWLCSWCKQKGDVDESVNPCVLCPKKGGALKPVNSSAEGAGSVSFVHLFCSLWMPEVYIDDLKKMEPVMNVGEIKETRKKLVCSVCKTKCGACVRCSHGSCRASFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSDLPENGSILPLEGSIAVRNDVSEANGLPVTLAVSDEAELERLQEWRISL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01197 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 473 IPR013083 -
Pumo10g01197 520 SUPERFAMILY FYVE/PHD zinc finger 284 342 IPR011011 -
Pumo10g01197 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 346 IPR013083 -
Pumo10g01197 520 MobiDBLite consensus disorder prediction 91 126 - -
Pumo10g01197 520 SMART PHD_3 294 341 IPR001965 -
Pumo10g01197 520 SMART PHD_3 415 471 IPR001965 -
Pumo10g01197 520 PANTHER PHD FINGER PROTEINS 84 496 - -
Pumo10g01197 520 Pfam PHD-finger 308 341 - -
Pumo10g01197 520 ProSiteProfiles Extended PHD (ePHD) domain profile. 350 471 IPR034732 -
Pumo10g01197 520 ProSiteProfiles Zinc finger PHD-type profile. 292 343 IPR019787 -
Pumo10g01197 520 Pfam PHD-zinc-finger like domain 352 470 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01197 289 475 C2H2 Transcription Factor Family AT3G14740 30.000 9.44e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01197 - - gmx:100775631 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01197 10 15621670 15625879 Pumo10g01197 10 15621670 15625879 ECH