Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01196 ATGTTGGGATGTGGTGCTGTGCCCCAACAAAATGTTGGAGTGGGGAGAGCCAATGAGAATGTTGATGCATCTGACTCTCTCAGTTTTGCACTTGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTAAAAGACGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTAATGCATTTCAGAAGGGTTTAAAAGTTAAATTCAAACCAGCCAATGCATCCAAAAATGATAGTGGAGCCACAGATGGTTCTGATACTTTACCAATATCAGATTCGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTTCCACCAAGGAGAAGAACCACCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAGGGGGTTACTGGTGAGAATGGGATGCCGGTGGACATGTGCAGAGTAGGTCAGTCTGACTGTGACAATCCAACAAATTCTAATGAAGCATCCATTCCCAATGCAACTGAAATGAACTTAACCAAGTCTGAGGATATTTTTCATGAAGTTCAAGGCAATGTTGATAAACCTTACAAATCCTGCTTATCTGGATGTGTTTCAGAAGACAAGTCTACTGCTTGTTTGCAAAATGCTTCCGTGCTTTCTGATCAGCACTGTCTTGTTCATTCTGCTTCAGAACCACCTGATTTTGGTTTCATAAAGAAGGATGCAATCTCTAGTTACATTCATCCATACATCAACAAGAAATTGCTGCAGATTCGTGATGGGGTGCCCTTGGAGGACATTATATCAGGTTCAAGTGATGAGGGAAATTATTCTTTGGTTGAATCCTTTGGGGCTAGTGGCTGCTCAAGTAGCCAAAATCAGAACTTAACTTGCGTTGACATTTCAAAGCCCGACGAAGTAAATATGGAGCAGTTGGTTAGGGCTAGAAAAATGGGACTTTTGGAATTTTCTCCACAGGATGAATTGGAGGGGGAACTTGTTTATTTTCAGTATAGACTATTGCAGAATGCAGTTGCAAAAAAGAGGCATATTGATAACTTAATCTACAGTGTTGCCAAGAGTTTGCCACATGAGATTGATAAGGCACATAAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAAGGCAGAAAAGAAAGAAAGCACAAAGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCAGCAGCATCTACTAGGGCTCTCCGGAAAGACACCTTAGATGAATCAATGCAACAAGAGAATTTGTTAAAATTGGATACTCTAAATGGAAGAACCGGTGCTTGTTCTCAGCCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCCGTGACAAGAACTTCGTCAGAGAAATATTCGGATTTTTGCATGCCAACCTCAGATTTGTCTAAGGAGCAATGTAAATCATGTGATATTTGCAGACGATCAGAGACTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGCAAGGTTTCGGTGCACTTGGATTGCTATCGTAGTGTGAAAGAAACAATAGGTCCATGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAGCTCTGGGGCATCTGCTATCAATTTCTGGGAGAAGCCTTGTATTGTTTCAGAATGTGCTCTCTGTGGAGGTACTACTGGTGCTTTTAGGAAGTCTTCAGATGGTCAATGGGTTCATGCTTTCTGTGCCGAGTGGGTTTTTGAGTCTACATTCAAAAGAGGACAAGTAGATGCTGTTGAAGGATTGTGTTGCTATGGCCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGTGAGGACTAGCAGCGGCAAGGCTCAACACAAGGCTTACTGTGAAAAACATAGTTTGGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAACTAGAGAGATTACGTCTTCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGAGGGAATTGGTACTATGTTCACATGACATACTGGCCTTTAAAAGAGATCATGTTGCTAGGTCTGTGCTGGTTCATAGCCCTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCACTTCAAAGATCAGATGATGTTACTGTGGACAGTTCAGTTTCTGCCAAGCGCTGTGTCAGAGTCGCCATTTCTATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCTCAAAGTCGATACAACCACAAGATTCCAGATAGAGCGCAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCATCTCGTAATATTTCAGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCCGAGACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCTTATCAAATGACAAGCACTCTAACGAGGATGTATATGCTAGTGAACCAGTGGAGCATGACAGGTAG 2670 0.4131 MLGCGAVPQQNVGVGRANENVDASDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKAHVYTNAFQKGLKVKFKPANASKNDSGATDGSDTLPISDSGLLDPVAVKSVPPRRRTTSNIRILKDNKVICSSEGVTGENGMPVDMCRVGQSDCDNPTNSNEASIPNATEMNLTKSEDIFHEVQGNVDKPYKSCLSGCVSEDKSTACLQNASVLSDQHCLVHSASEPPDFGFIKKDAISSYIHPYINKKLLQIRDGVPLEDIISGSSDEGNYSLVESFGASGCSSSQNQNLTCVDISKPDEVNMEQLVRARKMGLLEFSPQDELEGELVYFQYRLLQNAVAKKRHIDNLIYSVAKSLPHEIDKAHKQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRALRKDTLDESMQQENLLKLDTLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPTSDLSKEQCKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETIGPWYCELCEDLSSRSSGASAINFWEKPCIVSECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFKRGQVDAVEGLCCYGHCQTTFHPSCARSAGLYMNVRTSSGKAQHKAYCEKHSLEQKAKAETQKHGIEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSAKRCVRVAISMDTDPKLDDDCSTSQSRYNHKIPDRAQFSGKKIPHRAAASRNISDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKHSNEDVYASEPVEHDR 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01196 889 MobiDBLite consensus disorder prediction 810 834 - -
Pumo10g01196 889 Coils Coil 676 696 - -
Pumo10g01196 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 560 IPR013083 -
Pumo10g01196 889 PANTHER PHD FINGER PROTEINS 439 775 - -
Pumo10g01196 889 MobiDBLite consensus disorder prediction 734 756 - -
Pumo10g01196 889 SMART PHD_3 503 548 IPR001965 -
Pumo10g01196 889 SMART PHD_3 571 656 IPR001965 -
Pumo10g01196 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 657 IPR013083 -
Pumo10g01196 889 CDD ePHD 572 655 - -
Pumo10g01196 889 ProSiteProfiles Zinc finger PHD-type profile. 501 550 IPR019787 -
Pumo10g01196 889 SUPERFAMILY FYVE/PHD zinc finger 497 548 IPR011011 -
Pumo10g01196 889 Coils Coil 398 418 - -
Pumo10g01196 889 Pfam PHD-finger 515 548 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01196 504 617 C2H2 Transcription Factor Family AT3G14740 34.167 4.73e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo10g01196 zf-HC5HC2H_2 2.7e-06 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01196 - - gmx:100775631 1597.41