Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01183 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTGGCATGTGGGGGGACAGCTTTAAAGTTGATGGCGGTCTGAATTCAATTGCTTCCCCATTGTTAATGGTTGACACTGCTAGTATGGAGAACAAGTCTGAGTATATTCCTCAGGAACCAAGAGAGCCTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGAGCCGATCAAGAGACTACAAATAAAGATGTTAGTAAGATGCTAAGACGCCTAGCTCAGAATCGAGAGGCTGCTCGGAAAAGTAGGCTGAGGAAAAAGGCTTATGTTAAACAATTAGAATCAAGCCGTTTGAAGCTCATGCAATTGGAGCTGGAAATTGGGAAAGCAAGAAAACAGGGTCTGTATATGGGCACTGCATTAGATGCCGGCTATATAGGATCAACATCAGAAACAATAAACCCAGGGATTGTGGCTTTTGAAATTGAATATGGACAATGGGTTGAAGAGCAACAAAGGCGGAACGAAGAGCTTAGACATGCATTTCAAACGCAAGCACCTGATGTACAGCTCAATGTAGTGGTTCAGAGTGTCTTAAACCATTACTCACATCTGTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTCCTCTATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATTTTCCTTTGGATTGGAGGATCCCGTCCATCACAGCTTCTAAACATCATCGTGCCACAACTTGAGCCTTTGACTGAGCAACAAATTGTTGGTATTAACAACCTCCGCCTATCATCTCAGCAAGCTGAAGATGCTCTTTCACAAGGATTGGAAAAGCTTCAGCAGAGTCTGGTCCATGACATGGCAGTTGATCCCTTGGGCGTAGGAGGAAACTTGAGACTTCAGATGGCTCTTTCTATGGACAAATTTGAGGCACTAGAAGGTTTTGTAAACCAGGCTGATCACCTTAGGCAACAAACTCTGACTCACATGTCACGCATCCTGTCAACTCACCAAGCTGCTCGCGGCTTGCTGGCTCTTGGGGAATACTTTCATCGTCTTCGCACTCTCTGCTCTCTTTCGGCTGCTCGTCCATGTGGCCTTGCCTAA 1089 0.4536 MKMDIYEPFQQVGMWGDSFKVDGGLNSIASPLLMVDTASMENKSEYIPQEPREPSGSGSGSGSGADQETTNKDVSKMLRRLAQNREAARKSRLRKKAYVKQLESSRLKLMQLELEIGKARKQGLYMGTALDAGYIGSTSETINPGIVAFEIEYGQWVEEQQRRNEELRHAFQTQAPDVQLNVVVQSVLNHYSHLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTEQQIVGINNLRLSSQQAEDALSQGLEKLQQSLVHDMAVDPLGVGGNLRLQMALSMDKFEALEGFVNQADHLRQQTLTHMSRILSTHQAARGLLALGEYFHRLRTLCSLSAARPCGLA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01183 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 79 94 IPR004827 GO:0003700|GO:0006355
Pumo10g01183 362 Gene3D - 75 124 - -
Pumo10g01183 362 MobiDBLite consensus disorder prediction 46 73 - -
Pumo10g01183 362 ProSiteProfiles DOG1 domain profile. 146 357 IPR025422 GO:0006351|GO:0043565
Pumo10g01183 362 MobiDBLite consensus disorder prediction 54 71 - -
Pumo10g01183 362 Pfam bZIP transcription factor 76 104 IPR004827 GO:0003700|GO:0006355
Pumo10g01183 362 SMART brlzneu 72 132 IPR004827 GO:0003700|GO:0006355
Pumo10g01183 362 SUPERFAMILY Leucine zipper domain 76 109 IPR046347 GO:0003700|GO:0006355
Pumo10g01183 362 PANTHER TRANSCRIPTION FACTOR TGA9 3 358 - -
Pumo10g01183 362 Coils Coil 95 122 - -
Pumo10g01183 362 FunFam BZIP family transcription factor 75 124 - -
Pumo10g01183 362 Pfam Seed dormancy control 165 238 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01183 Pumo-Chr10 15494552 15499490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01183 3 358 Calmodulin-binding Proteins AT1G77920 53.056 4.05e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo10g01183 DOG1 7.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01183 K14431 - gmx:100794268 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01183 10 15494552 15499490 Pumo10g01183 10 15494552 15499490 ECH
Pumo9g01296 9 38307713 38313513 Pumo10g01183 10 15494552 15499490 PCT