Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01174 ATGTCTTCTTCGTCGTCGTCGTCGTCGAATTCGCCGTGTGCGGCGTGCAAGATTCAGCGGCGGAAGTGCACGCAGGAGTGTGTGTTCGCGCCGTATTTTCCGCCGGACAACCCGCAGCGGTTCGCGTACGTGCACAAGGTGTTCGGGGCGAGCAACGTGGCCAAGCTTCTCAACGAGCTCAACGCTGCTCAGCGCGAGGACGCGGTTAAGTCCTTGGCCTACGAGGCGGAAGCGCGTTTGCGGGACCCAGTCTATGGCTGCGTGGGCCTCATCTCCCTCCTCCAGCACAAGCTCAAGCAGTTGCAGAACGAACTCCACCACGCCAAGAAGGAACTCGCCTCTTACATCGGACCCCACGCCATGCTCCCGCCTCCGCCACCTCCACCGCGCACTTTCTCTCTTTTCCCCTTCAAAACCGCGCCCACTCAGCACGACCTTTTCGGCTTCAACGACGACGGCAGTGCTTCCACTTCCCATGCTCCCCACGCCGGATTCAACCACCTTGCTGTAATCTCGCCTTCCCCCGCCGTTGATCACGCGTTTCCTCACTCGCCGATGCATCCTCTTGCTCTTCCGCATCACCAACACCTTATGCGCTCCCCTATGCAGCCCAAGCCACAAACCGACCCGGCTTAG 636 0.6069 MSSSSSSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLKQLQNELHHAKKELASYIGPHAMLPPPPPPPRTFSLFPFKTAPTQHDLFGFNDDGSASTSHAPHAGFNHLAVISPSPAVDHAFPHSPMHPLALPHHQHLMRSPMQPKPQTDPA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01174 211 Coils Coil 91 111 - -
Pumo10g01174 211 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Pumo10g01174 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 162 - -
Pumo10g01174 211 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01174 Pumo-Chr10 15378975 15380717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01174 7 123 AS2 family AT5G66870 80.342 3.53e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo10g01174 LOB 1.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01174 - - gmx:100819170 348.206