Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01172 ATGCAGGACACCAGCATTCTTGGTGCTGAAAGTCACCCTCTCCATTTGCATGGCTTTAACTTCTTTGTTGTTGGTCAAGGTTTTGGTAACTTTGATCCAAATAAGGACCCTGCAAACTTCAATCTTGTTGATCCTGTTGAAAGGAACACAGTTGGTGTCCCATCTGGTGGATGGGTTGCAATCAGATTCCTTGCTGATAACCCAGGGGTATGGTTCATGCATTGCCATCTTGAAGTCCACACCAGCTGGGGTCTGAAAATGGCCTGGATTGTGTTGGATGGAAAACTTCCAAATCAGAAGCTGCTTCCACCACCAGCTGATCTTCCAAAGTTGCAACCTGAAGTTGAGCATCCCTGGAAGGCTTATGGATGGGCAGCTAGGGATACATCTGGTGTTCTCTCCCCTTTTTGCTTCTCTAGAAGGAAAATAGGAGAAAACGATGTGACATTCAAAGTGTTGTACTGTGGAATATGCCACTCGGACCTTCATAAGTTGAAGAATGAATGGAGTGATTCCATCTATCCACTTGTCCCGGGTCGTGAGATTGTTGGAGAAGTGACAGAGGTGGGAAGCAAAGTGGACAAGTTCAAGGTTGGAGACAAGGTGGCTGTAGGAGTCTTGGTTGGGTCCTGCCACTCATGCCAAAACTGTGTCAACAATCTTGAGAATTACTGCCAACAAGGGATTCCCACATATGGTGCCAAGTATGTGGATGGCACCATCACATATGGGGGATTCTCTGACTTCATGGTTGCAGATGAGCACTTTGTTGTCAACATTCCAAGTGGCCTACCTCTTGATGCTGCTGCTCCTCTCCTTTGTGCAGGGATCACAGTGTATGGCCCTTTGAGATATTTTGGGCTTGACAAACCTGGCATGCATCTGGGTGTGGTTGGCCTTGGTGGACTAGGCCATCTGGCTGTCAAGTTTGCAAAAGCCCTTGGCTTGAAGGTCACTGTCATCAGTACCTCTCCTAATAAGAAGAATGAAGTCATACAACATCTTGGAGCTAATTCCTTTGTGGTCAGTAGAGACCAAGATCAAATGCAGGCTGCAATGGGCACCTTGGATGGTATAATTGATACTGTTTCTGCAGTCCATCCTATCATGCCTTTGATTGATCTATTGAAGTCTCATGGGAAACTAGTAACGGTTGGGGCACCAGAAAGGCCTCTGGAGTTGCTACTCCCGCCTTTAATTATGGGGAGAAAAAGTATAGCCGGTAGTTACATTGGAGGGATCAAGGAGACACAAGAAATGATTGATTTTGCTGCTGAACACAATGTTAGACCAGAAATTGAGGTAATTCCTATGGATTATGTGAACACAGCGATGGAGCGTCTCCAAAAATCTGATGTTAAATATCGATTTGTGATTGACATTGGAAACACATTGAAGCCACACTATTAG 1410 0.4539 MQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPANFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKLPNQKLLPPPADLPKLQPEVEHPWKAYGWAARDTSGVLSPFCFSRRKIGENDVTFKVLYCGICHSDLHKLKNEWSDSIYPLVPGREIVGEVTEVGSKVDKFKVGDKVAVGVLVGSCHSCQNCVNNLENYCQQGIPTYGAKYVDGTITYGGFSDFMVADEHFVVNIPSGLPLDAAAPLLCAGITVYGPLRYFGLDKPGMHLGVVGLGGLGHLAVKFAKALGLKVTVISTSPNKKNEVIQHLGANSFVVSRDQDQMQAAMGTLDGIIDTVSAVHPIMPLIDLLKSHGKLVTVGAPERPLELLLPPLIMGRKSIAGSYIGGIKETQEMIDFAAEHNVRPEIEVIPMDYVNTAMERLQKSDVKYRFVIDIGNTLKPHY 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01172 469 Gene3D - 275 431 - -
Pumo10g01172 469 SMART PKS_ER_names_mod 131 459 IPR020843 GO:0016491
Pumo10g01172 469 SUPERFAMILY GroES-like 129 292 IPR011032 -
Pumo10g01172 469 Pfam Alcohol dehydrogenase GroES-like domain 146 259 IPR013154 -
Pumo10g01172 469 ProSitePatterns Multicopper oxidases signature 2. 74 85 IPR002355 GO:0005507
Pumo10g01172 469 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 264 429 IPR036291 -
Pumo10g01172 469 FunFam Cinnamyl alcohol dehydrogenase 275 431 - -
Pumo10g01172 469 SUPERFAMILY Cupredoxins 9 121 IPR008972 -
Pumo10g01172 469 Pfam Multicopper oxidase 11 93 IPR011706 GO:0005507|GO:0016491
Pumo10g01172 469 Gene3D - 1 116 IPR008972 -
Pumo10g01172 469 FunFam Uncharacterized protein 124 274 - -
Pumo10g01172 469 ProSitePatterns Multicopper oxidases signature 1. 69 89 IPR033138 -
Pumo10g01172 469 Gene3D - 124 461 - -
Pumo10g01172 469 FunFam Putative cinnamyl alcohol dehydrogenase 6 432 461 - -
Pumo10g01172 469 CDD CAD1 123 460 IPR047109 GO:0016616
Pumo10g01172 469 PANTHER ALDEHYDE REDUCTASE 113 464 IPR047109 GO:0016616
Pumo10g01172 469 Pfam Zinc-binding dehydrogenase 302 425 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01172 Pumo-Chr10 15311923 15317123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01172 120 468 Monolignol Biosynthesis Gene Families AT4G37990 68.481 6.22e-162 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01172 K23232 - gmx:100812491 665.225