Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01167 ATGAGTTCAGCTTCCAATATGAGAGTGAGCGAGCAAGAACACTTTCATCTTGAGGATACTAGTGAAATAGAGAGGTCCCTTTGGGTGCTGAATCCTCCCAATCCACCACCTCTATGGAAGAAGCTATTTAGTCCACTGAAGAAAAGTGTGTCCTTTTTCTCATCCAAGAAGAAGACTTGCCTTGGACATGCTGTTTCATTCTTAGAGAGTTTATTCCCCATCCTTTGCTGGTTCAAAAATTACAAAGCCTCCAAGTTTAAAGATGATTTGCTAGCAGGTTTAACTCTTGCCAGCCTCAGCATACCTCAGAGTATAGGATATGCTAATTTGGCAAAACTTGATCCTCAGTATGGACTGTACACCAGTGTTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATTGCAATTGGACCTGTAGCTGTAGTTTCATTGCTGCTATCCTCCCTTGTCCCCAAAGTGGTAGATCCTACTGTTGATCCTGATGCCTACAGGAATGTTGTCTTTACCGTGACCTTATTTGCTGGAATCTTTCAAGCTGCATTTGGTGTTTTCAGGTTGGGGTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGATTCACGGCAGGCGCAGCCATCATTATTGGTCTTCAGCAGCTCAAGGGGTTGCTGGGGATTAGTCACTTTACCAACAAAACTGATGTAATATCAGTTTTGGAATCTGTTTATAAGTCACTCCATCAACAAATTACATCTGGAGAAAAATGGTATCCTCTGAATTTTGTCATCGGGTGTTCATTCCTGATTTTCCTTTTAATAGCCCGATTTGTTGGCAGAAGAAACAAAAAACTTTTCTGGTTGCCTGCTATTGCTCCTCTTCTATCAGTCATATTATCAACTTTAATTGTGTATTTGTCAAAAGCTGATAAGGATGGGGTCAATATAATAAAGCATGTCAAAGGAGGCTTGAATCCAAGTTCAGTTCACCAATTACAATTCCATGGTCCACATGTTGGACAAGCTGCTAAAATTGGATTGATCTCTGCCGTTATTGCTCTTACTGAAGCAATAGCAGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGCAACAAAGAAATGTTAGCAATGGGCTGTATGAACATAGCTGGATCTCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCAGTGCAGGATGTCAAACATCAGTATCAAACATTGTGATGGCAATTACTGTGCTTTTGTGTCTTGAATTGTTTACAAGGCTCCTATACTACACTCCTATGGCCATACTTGCTTCTATCATCCTCTCTGCACTTCCTGGATTAATTGACATAAGTGAAGTTTGCTATATTTGGAAGGTTGACAAGTTTGACTTTCTTGCCTGCATTGGTGCCTTCTTCGGGGTCTTGTTTGTATCGGTGGAAATTGGTCTTCTTGTTGCAGTGTCAATCTCATTTGCAAAGATACTAATACAATCAATTCGACCTGGGATAGAAGTTCTAGGTAGAGTTCCAAGAACCGAAGCCTTCTGCGATGTTAGTCAATATCCCATGGCCATAAGCACTCCAGGCATGTTGGTGATTCGCATAAGCTCTGGCTCACTCTGCTTTGCAAATGCTAATTTTGTTAGAGAAAGAATACTAAAGTGGGTCACGGAAGAAGAAAACGAGCTTGTCAAGGGAAGGGTCCAAGCAGTAATCTTAGACATGAGCAACCTGATGAATGTTGATACTTCTGGGATTCTAGTACTGGAGGAACTGCACAAGAGGTTGCTTTCGCGTGGCGTACAATTGGCTATGGTGAACACGAGGTGGCTAGTGATTCACAAGCTGAAAGTGGCACACTTTGTGGATAAAATCGGAAAGGAGTGGGTTTTCCTTACTGTTGCTGAAGCTGTAGATGCATGTCTATCTTCTAAACTCCCTGAGCCATGA 1962 0.4179 MSSASNMRVSEQEHFHLEDTSEIERSLWVLNPPNPPPLWKKLFSPLKKSVSFFSSKKKTCLGHAVSFLESLFPILCWFKNYKASKFKDDLLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLVPKVVDPTVDPDAYRNVVFTVTLFAGIFQAAFGVFRLGFLVDFLSHAALVGFTAGAAIIIGLQQLKGLLGISHFTNKTDVISVLESVYKSLHQQITSGEKWYPLNFVIGCSFLIFLLIARFVGRRNKKLFWLPAIAPLLSVILSTLIVYLSKADKDGVNIIKHVKGGLNPSSVHQLQFHGPHVGQAAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFSAGCQTSVSNIVMAITVLLCLELFTRLLYYTPMAILASIILSALPGLIDISEVCYIWKVDKFDFLACIGAFFGVLFVSVEIGLLVAVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPMAISTPGMLVIRISSGSLCFANANFVRERILKWVTEEENELVKGRVQAVILDMSNLMNVDTSGILVLEELHKRLLSRGVQLAMVNTRWLVIHKLKVAHFVDKIGKEWVFLTVAEAVDACLSSKLPEP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01167 653 SUPERFAMILY SpoIIaa-like 531 645 IPR036513 -
Pumo10g01167 653 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271|GO:0008272
Pumo10g01167 653 PANTHER SULFATE TRANSPORTER 52 646 IPR001902 GO:0016020|GO:0055085
Pumo10g01167 653 ProSiteProfiles STAS domain profile. 541 645 IPR002645 -
Pumo10g01167 653 NCBIfam sulfate permease 73 641 IPR001902 GO:0016020|GO:0055085
Pumo10g01167 653 Pfam STAS domain 525 641 IPR002645 -
Pumo10g01167 653 FunFam Sulfate transporter 31 504 648 - -
Pumo10g01167 653 Gene3D STAS domain 504 648 IPR036513 -
Pumo10g01167 653 CDD STAS_SulP_like_sulfate_transporter 525 638 - -
Pumo10g01167 653 Pfam Sulfate permease family 86 472 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01167 Pumo-Chr10 15116957 15121468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01167 24 650 Inorganic Solute Cotransporters AT5G10180 63.422 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01167 K17469 - gmx:100805269 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01167 10 15116957 15121468 Pumo10g01167 10 15116957 15121468 ECH
Pumo9g01316 9 38713685 38719545 Pumo10g01167 10 15116957 15121468 PCT