Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01166 ATGTCTTCAATGGGTCCTCCTGCTGATGAAAATATTGAAACAAAAGAGATGGATCTCAGAAGTATGTCATCTTCTTCACAGGGTCAGGCACCACAAGTCCACAAAGTGGCAATTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAAGCCACTATAAAAGAAACATTCTTTTCTGATGATCCTCTAAGACCCTTCAAAGATCAACCTAAATCAAGGAAGATCAGGCTTGGTATTGAGGCCATATTCCCAATACTTAGTTGGGGGAGAAGTTACAACCTTAAAAAATTTAGAGGAGATTTAATATCTGGTCTCACTATTGCAAGTCTTTGCATTCCTCAGGATATTGGATACGCTAAGCTTGCACATTTGGCTCCACAGTATGGACTGTACTCCAGTTTTGTTCCACCATTGATTTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATAGGACCAGTGGCAGTGGTTTCTCTCTTGTTGGGGACTTTACTTAGTAATGAGATTGATCCTAATACACATCCAGCAGAATATCAGCGACTTGCTTTTACGGCCACTTTTTTTGCTGGGATTACTCAAGCAACGCTTGGTGTTCTTAGGTTAGGATTCTTGATTGACTTCCTATCCCATGCTGCTATTGTTGGTTTTATGGGGGGTGCTGCTATCACAATTGCCCTTCAACAGCTTAAGGGTTTCCTTGGCATTAAAACTAAACAGTTCACAACGGATACTGATATTGTCCATGTGCTGCGTTCAGTATTCTCAACAGCCCATCATGGATGGAACTGGCAAACTATAGTCATTGGAGCTAGCTTTTTGGGATTTCTTCTGGTTGCCAAATATATTGGAAAGAAAAACAAAAAACTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCCGTTATTTTGTCCACTTTTTTCGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGAAATTGTAAGAAAAATAGAAAAAGGCATCAATCCATCATCTGTTAAAGATCTTTATTTTACCGGAGAATACCTTGGAAAAGCTTTTAAAATTGGCATCGTGGCAGGCTTGATAGCATTGACTGAAGCAACAGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTGGCATTAGGAGCAATGAATGTTGTTGGTTCCATGACTTCGTGTTATGTAGCAACAGGTTCTTTCTCTCGGTCAGCGGTAAATTACATGGCAGGTTGCCAAACTGCAGTCTCTAATATTGTGATGTCAGTAGTTGTGTTCCTAACCCTGGAATTCATCACTCCTCTTTTCAAGTACACTCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCATCAACCTTGTAGACTATGAGGCAGCAATTTTGATTTGGAAGATAGATAAATTTGATTTTGTAGCTTGCATGGGTGCATTCTTTGGGGTTGTTTTTGTCTCCGTTGAGATAGGACTTCTAATTGCTGTCGCTATTTCCTTTGCAAAGATCCTATTACAAGTCACAAGGCCCCGAACTGCTATTCTGGGGAAGATTCCTAGGACTACTGTCTATAGAAACATCCAACAATATCCAGAAGCTAGTAAGATTCCAGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGACATTAAGATGGCTAATGGACGAAGAAGAACAAGTGAAAGGAGACTACCGCACAAAAATCCAGTTTTTGATACTTGAAATGTCACCCGTTACTGACATAGATACAAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAAGAGTGTTGAGCTTGTTCTTGCAAATCCTGGCCCAGCAGTGACAGACAAGCTTTACGCGTCCAGTTTTGCAAACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCAGAGGCTGTAGCATATTGTTCTCCAAAGGTGGTTGAGGACCCATGA 1986 0.4084 MSSMGPPADENIETKEMDLRSMSSSSQGQAPQVHKVAIPPRQNLFKEFQATIKETFFSDDPLRPFKDQPKSRKIRLGIEAIFPILSWGRSYNLKKFRGDLISGLTIASLCIPQDIGYAKLAHLAPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEIDPNTHPAEYQRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKTKQFTTDTDIVHVLRSVFSTAHHGWNWQTIVIGASFLGFLLVAKYIGKKNKKLFWVPAIAPLISVILSTFFVFITRADKQGVEIVRKIEKGINPSSVKDLYFTGEYLGKAFKIGIVAGLIALTEATAIGRTFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSVVVFLTLEFITPLFKYTPNAILSAIIISAVINLVDYEAAILIWKIDKFDFVACMGAFFGVVFVSVEIGLLIAVAISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKIPGVLIVRVDSAIYFSNSNYVKERTLRWLMDEEEQVKGDYRTKIQFLILEMSPVTDIDTSGIQAFEELHRSLEKKSVELVLANPGPAVTDKLYASSFANTIGEDKIFLTVAEAVAYCSPKVVEDP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01166 661 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Pumo10g01166 661 NCBIfam sulfate permease 83 649 IPR001902 GO:0016020|GO:0055085
Pumo10g01166 661 PANTHER SULFATE TRANSPORTER 42 654 IPR001902 GO:0016020|GO:0055085
Pumo10g01166 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Pumo10g01166 661 Gene3D STAS domain 510 657 IPR036513 -
Pumo10g01166 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
Pumo10g01166 661 MobiDBLite consensus disorder prediction 1 34 - -
Pumo10g01166 661 FunFam Sulfate transporter 31 510 656 - -
Pumo10g01166 661 Pfam STAS domain 531 649 IPR002645 -
Pumo10g01166 661 SUPERFAMILY SpoIIaa-like 532 654 IPR036513 -
Pumo10g01166 661 MobiDBLite consensus disorder prediction 18 32 - -
Pumo10g01166 661 Pfam Sulfate permease family 96 478 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01166 Pumo-Chr10 15098103 15103468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01166 1 660 Inorganic Solute Cotransporters AT1G22150 74.242 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01166 K17470 - gmx:100804208 1226.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01166 10 15098103 15103468 Pumo10g01166 10 15098103 15103468 ECH
Pumo9g01318 9 38769645 38773850 Pumo10g01166 10 15098103 15103468 PCT