Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01156 ATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCTCAACCCCCTCTTCTTCTTATCCTTCTACCTCTTATTCTCCTTCTCTCAACTACTTCCCCTCCTCCGCCTCCCTCCCTAATGGTTGCTCCACATCGATGATCCATGTATTTGCAGACGGGTTATCATCCTTAACCAACACCCAAAACATCATAGGCTTTGGGCAAGGACAACCGACATCTCTTCTGGGTCTCAACCACCTAACCCCGTCTCAGATCTCTCAGATCCAGGCCGAAATCCAGATCCAGAGCCAGAGCCAGAGCCAGAGCCAGCAGCTGAACCACAACACCCTGAGCTTCCTCGGGCCGAAGCCCATCCCTATGAAGCACGTGGGCATGCCTCCGAAGCCCACGAAGCTTTACAGAGGGGTTAGGCAGAGGCACTGGGGAAAGTGGGTGGCTGAGATCAGACTCCCGAAGAACCGGACCAGGCTCTGGCTTGGAACCTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCTAGGCTCAACTTCCCCAACCTCCGACACCAGGGTTCCTCCGTCGGTGGAGACTTCGGGGAGTACAAGCCGCTTCATTCCTCTGTTGACGCCAAGCTTCAGGCCATTTGCGAAGGCCTGGCTGAGCTGCAGAAACAGGGGAAGACCGAGAAGCCTCAGAAGAGGTCGCGATCCAAACTCGCTCCTCCGCCAGAGAAGCTTGATTCCGATGACAAGGGTTCGGAGAACAACAACAACAACTCTTGTAAGGTGGAAGCTGCTGCTTCCTCGTCTCCGGTCACGACGGAGAGCGAGGGATCTGAAGGTTCTTCGCCGCTTTCGGATCTGACGTTTGCCTGA 885 0.5525 MEVLEPFMKSPSSTPSSSYPSTSYSPSLNYFPSSASLPNGCSTSMIHVFADGLSSLTNTQNIIGFGQGQPTSLLGLNHLTPSQISQIQAEIQIQSQSQSQSQQLNHNTLSFLGPKPIPMKHVGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAELQKQGKTEKPQKRSRSKLAPPPEKLDSDDKGSENNNNNSCKVEAAASSSPVTTESEGSEGSSPLSDLTFA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01156 294 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 277 - -
Pumo10g01156 294 SUPERFAMILY DNA-binding domain 131 189 IPR016177 GO:0003677
Pumo10g01156 294 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Pumo10g01156 294 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Pumo10g01156 294 MobiDBLite consensus disorder prediction 226 294 - -
Pumo10g01156 294 MobiDBLite consensus disorder prediction 226 255 - -
Pumo10g01156 294 MobiDBLite consensus disorder prediction 256 294 - -
Pumo10g01156 294 MobiDBLite consensus disorder prediction 1 21 - -
Pumo10g01156 294 Pfam AP2 domain 132 180 IPR001471 GO:0003700|GO:0006355
Pumo10g01156 294 Gene3D AP2/ERF domain 131 189 IPR036955 GO:0003700|GO:0006355
Pumo10g01156 294 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Pumo10g01156 294 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Pumo10g01156 294 FunFam Ethylene-responsive transcription factor 2 130 189 - -
Pumo10g01156 294 CDD AP2 130 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01156 Pumo-Chr10 14933646 14935639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01156 69 294 AP2-EREBP Transcription Factor Family AT1G78080 59.916 9.63e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo10g01156 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01156 K09286 - gmx:732559 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01156 10 14933646 14935639 Pumo10g01156 10 14933646 14935639 ECH
Pumo9g01331 9 38952745 38954569 Pumo10g01156 10 14933646 14935639 PCT