Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01154 ATGATGACGAACCAAAATGTGGTGACTCATGAGGTTATTAACACGCTGATTGCCGTGGCAGCCTCCATTTCAAACTCAACTGTGTTGCCAAGTGCAACAGTGCCAGAATCCATGGCTGTGCTTGGTGGGTTTTGGGGTCTTCCCCATAAAAATCTTGTGAAAAGATTGGAAGGAGCTAAAGTTAGTGCTTGGATTGATTCAATGAGAGCCTCTTCCCCAACTCGTACCAAATCAGAAAGCCAAGAAAAAAGATCTTGGATTGTAAGCACAACATATGATGAACATGTGGTTTATGATTATAAGTGTGGTTATGCTCCTCACCTGACTCTGCTTCTATTTCGCCACTGTTTGCAGCTTTATCACCCTTCAGCTCTGAACACGTTTGAGCAAATAGTATATAGTTCCAAAGGAAAGCAGATTGTAGTTTTTCTTGACTACGATGGAACTCTCTCTCCAATTGTTGCAGATCCGGATAAGGCTTTCATGACTAGAAAGATGAGAGCAACACTAAAGGGCATAGCAAGGCATTTTCCCACAGCAATCGTGACAGGAAGGTGCAGAGACAAGGTATATAACTTTGTAAAATTGACAGAACTTTACTATGCCGGAAGCCATGGCATGGACATCAAGGGTCCAACAAAAAGCCAAAGTCCAAAGCAAGGTAATAATAAAGGAGTGTTGTTCCAACCCGCGAGTCAATTCCTGCCCATGATCGATGAGGTGTACAAGATCTTGTTAGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTTGAGAACAATAAGTTTTGCCTGTCCGTGCACTTTCGTTGTGTTGACGAAAAGAGTTGGGCAACGTTGGCGGAGAAAGTTAGATTGGTGCTCAATGAGTACCCACAACTTAGGCTAACCCAAGGGAGAAAAGTGCTAGAGATCCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTTTTGTTAGAATCATTAGGATACGAGAATTCGAATGATGTATTTCCAATCTATATTGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGCGCAGTAGGGGTCAAGGAATTGGGATTCTTGTTTCTAGAGTTGCAAAAGAAACAGATGCTTCCTATACCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGCGTTTGGTGGAGTGGAAAAGATCGAGTACTGTGACTCCCACAAGTGTATAG 1203 0.4298 MMTNQNVVTHEVINTLIAVAASISNSTVLPSATVPESMAVLGGFWGLPHKNLVKRLEGAKVSAWIDSMRASSPTRTKSESQEKRSWIVSTTYDEHVVYDYKCGYAPHLTLLLFRHCLQLYHPSALNTFEQIVYSSKGKQIVVFLDYDGTLSPIVADPDKAFMTRKMRATLKGIARHFPTAIVTGRCRDKVYNFVKLTELYYAGSHGMDIKGPTKSQSPKQGNNKGVLFQPASQFLPMIDEVYKILLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWATLAEKVRLVLNEYPQLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVAKETDASYTLQDPSEVEQFLRRLVEWKRSSTVTPTSV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01154 400 FunFam Trehalose 6-phosphate phosphatase 140 226 - -
Pumo10g01154 400 NCBIfam trehalose-phosphatase 138 387 IPR003337 GO:0003824|GO:0005992
Pumo10g01154 400 SUPERFAMILY HAD-like 141 389 IPR036412 -
Pumo10g01154 400 NCBIfam HAD-IIB family hydrolase 142 351 IPR006379 -
Pumo10g01154 400 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 51 394 IPR044651 GO:0004805|GO:0005992
Pumo10g01154 400 Gene3D - 140 245 IPR023214 -
Pumo10g01154 400 Gene3D - 246 397 IPR023214 -
Pumo10g01154 400 Pfam Trehalose-phosphatase 143 377 IPR003337 GO:0003824|GO:0005992
Pumo10g01154 400 FunFam Trehalose 6-phosphate phosphatase 237 396 - -
Pumo10g01154 400 CDD HAD_TPP 141 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01154 Pumo-Chr10 14898983 14901954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01154 136 386 Trehalose Biosynthesis Gene Families AT1G70290 26.394 1.17e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01154 K01087 - gmx:100788641 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01154 10 14898983 14901954 Pumo10g01154 10 14898983 14901954 ECH
Pumo9g01334 9 38981835 38984719 Pumo10g01154 10 14898983 14901954 PCT