Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01129 ATGAGTGAGACAGCGAGTCTTCATGCACAAACAAGGACACCCATTTCTTCTTTGGATGCAATGGCTCATCACCACCCTCATTATCGGTCACCCTTCGGAGACACTACCTTCACCAAATTGTTCGTTGGAGGACTAGCCTGGGAGACCCCAACCGAAGAAATGCGCAAATATTTCGAGCAGTTCGGAGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGATTCGTAACATTCTGCGATCAAGAATCAGCTAGAAGGGCATGTGCTGATCCAAATCCAATAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCTCTTGGAAGGACTAGACCATCACCACCTCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGAACAACACAGGGTGTTCCGGGAGCGGGACCGCCGCCGTCGCTGCCGCCACCACCGCCTGTTATGTACCCACCATATGGCTATACAACCTACACTCCTGATTATGGGTACCACCAAGCCACATTGTACAACCCACAGATTCAGCAACCACAATATTATCAACAACTTTATGGAGCATCATCTTCTACCATGAGCACCCCATATTACTATGGTTATTCTGTGCAAGCACCAAGAAACACATTTTCTTCACCCCAAGCAAATCGCCTATCACCTGGACCATCCTATCTATACTACCCTACACCCATGGAAGTCTCATTTTCTGGATATCGTCCACCCCAACAATCACCAATGAGGCAACCCTTTCCTTCTCCTAATGATTCACAGAGTCAGCAGCGTACCTCTTCTGAAACAGCAGCCGGGGTAGCTATAACTTCAGAAAGATCAAATACCCAAGGGAAGAACTAA 864 0.4676 MSETASLHAQTRTPISSLDAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGTTQGVPGAGPPPSLPPPPPVMYPPYGYTTYTPDYGYHQATLYNPQIQQPQYYQQLYGASSSTMSTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYPTPMEVSFSGYRPPQQSPMRQPFPSPNDSQSQQRTSSETAAGVAITSERSNTQGKN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01129 287 MobiDBLite consensus disorder prediction 240 287 - -
Pumo10g01129 287 SMART rrm1_1 39 111 IPR000504 GO:0003723
Pumo10g01129 287 MobiDBLite consensus disorder prediction 115 149 - -
Pumo10g01129 287 FunFam RNA-binding protein 24-B isoform X1 25 134 - -
Pumo10g01129 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Pumo10g01129 287 Gene3D - 6 135 IPR012677 -
Pumo10g01129 287 MobiDBLite consensus disorder prediction 239 287 - -
Pumo10g01129 287 PANTHER BOULE-RELATED 18 268 - -
Pumo10g01129 287 CDD RRM_RBM24_RBM38_like 38 113 - -
Pumo10g01129 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Pumo10g01129 287 SUPERFAMILY RNA-binding domain, RBD 22 140 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01129 Pumo-Chr10 14524224 14529066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01129 34 114 C2H2 Transcription Factor Family AT2G19380 39.506 2.96e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01129 K25006 - gmx:100811977 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01129 10 14524224 14529066 Pumo10g01129 10 14524224 14529066 ECH
Pumo9g01367 9 40530725 40536817 Pumo10g01129 10 14524224 14529066 PCT