Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01109 ATGGCGCTACTACGCCTTGTGTGCTCAACAAATCAGTTATCCACTCAACCCCATTCCCAATCCACCTCTTTCTGTTTCTTTCGCAAAACACCCCATTCCCAATCCATCAATATCAACCTCCCCAATCCCTCTTCCTTTCACTTTCCACGCCTATCCCTTATCACAACCAAACAAACCCTTAACCTCACTCCCACACTCACCTCCACTTCCCAACAACAACAACAACAACAAACCGAGCCTGTCGCCGAAGAAGAATTTTCTCGCACCAGGTTGCTCGCTCAGAACGTGCCCTGGACAAGCACCCCCGAAGACATTCGCTCTCTCTTCGAAAAACATGGAAAAGTCCTCCAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCAGAAGAGGCACTTGAAGCTCTCAATAATCTCGAATCGTATGAGTTTGAGGGTCGTGTAATTAAAGTCAATTATGCTCGGCCGAAAAAGGAGAAAACACCGCCCCCTGTGAAACCAAAGCCTGTGGTGACCTTTAACTTGTTTGTTGCTAACTTATCTTATGAAGCGAGCTCCAAAGATCTCAAGGAGTTTTTTGATTCGGGAACTGGTAAAGTTGTTTCTGCTGAGGTTGTGTATCGTGATAATCCTAGAAGGCCGTCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTTCTGAGTTCCAAGGAAAGGTTTTTATGGGAAGGCCAATCAGGGTGGATCGGGGTCGGCGGTTTGTTCAACAACCAGGGGACGGAAGTGCCAAGTCTGAAGATACTCCTTCTGAGTTGAGTGTGAATGGGGCAGAAGCTGACAAAGCTGATTGA 879 0.4687 MALLRLVCSTNQLSTQPHSQSTSFCFFRKTPHSQSININLPNPSSFHFPRLSLITTKQTLNLTPTLTSTSQQQQQQQTEPVAEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKTPPPVKPKPVVTFNLFVANLSYEASSKDLKEFFDSGTGKVVSAEVVYRDNPRRPSGYGFVSFKSKKEAEAALSEFQGKVFMGRPIRVDRGRRFVQQPGDGSAKSEDTPSELSVNGAEADKAD 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01109 292 CDD RRM_SF 185 258 - -
Pumo10g01109 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Pumo10g01109 292 FunFam RNA-binding protein CP33, chloroplastic 56 170 - -
Pumo10g01109 292 MobiDBLite consensus disorder prediction 259 292 - -
Pumo10g01109 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 256 IPR000504 GO:0003723
Pumo10g01109 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 160 IPR000504 GO:0003723
Pumo10g01109 292 PANTHER OS02G0815200 PROTEIN 46 259 - -
Pumo10g01109 292 SMART rrm1_1 184 258 IPR000504 GO:0003723
Pumo10g01109 292 SMART rrm1_1 90 162 IPR000504 GO:0003723
Pumo10g01109 292 SUPERFAMILY RNA-binding domain, RBD 71 174 IPR035979 GO:0003676
Pumo10g01109 292 Gene3D - 171 276 IPR012677 -
Pumo10g01109 292 Gene3D - 56 170 IPR012677 -
Pumo10g01109 292 SUPERFAMILY RNA-binding domain, RBD 178 266 IPR035979 GO:0003676
Pumo10g01109 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Pumo10g01109 292 FunFam RNA-binding protein CP33, chloroplastic 171 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01109 Pumo-Chr10 14295023 14298094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01109 89 265 Eukaryotic Initiation Factors Gene Family AT3G16380 30.729 2.84e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01109 - - gmx:100790439 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01109 10 14295023 14298094 Pumo10g01109 10 14295023 14298094 ECH