Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01107 ATGGCACTAGAGGCTGTTGTTTTCCCGCAGGATCCATTTGCATATGGTTGCAGCAAGGATTATTTGTACTCCTTAGTAGGAGTACAAACACCCAACTACGGTGGCAATTTCCAAGCAGCGGAAGAAGAGAAATTCCTCCTAGGAATCATCAACAACAACATAGAACACAACCTTCATGCAAACTGGGATTCTTCTTCTACATCGGTGATGCAAAATGTTAAGGAACAATGGGATTCCCACTCCTCCTCCCCTGAAGCCTGCACCGTTGATCAATCCATGACCGCACCTTTCCCTCCTCCTTCTTCCTCCGTGGAAGCCGCCACCACCACCACGAGTCGCCGTAAACGACGTCGCACCAAGAGCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCAGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACTTGGCTGTGCTCCGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGATCAAGCGTCTATTATTGGAGGGGCGATTAACTTTGTGAAGGAGCTGGAGCAGCTTTTGCAGTCGATGGAGGGTCAAAAGAGAACGAACCAACCGCAAGAGAATGTTGGGTTGAATGGGTCGACAGCACCCTTTGCTGAGTTCTTCACGTTTCCTCAATACACGACACGTGGCACGACCATGGCACAGAACCAGGAGCAGAAGCAGTGGGCCGTGGCAGACATTGAAGTGACCATGGTGGATAGCCATGCCAATCTAAAGATACTCTCAAAGAAACAACCTTGCCAGCTTATGAAGATCGTTGTTGGGCTTCAAAGTCTCAGGCTCAGCATTCTCCACCTTAATGTTTCCACTCTCGACGATATGGTCCTTTACTCAATTAGCGTCAAGGTAGAGGACGGGTGTCAGCTGAACACGGTCGATGAAATTGCGGCTGCAGTGAATCAACTATTACGCACAATTCAAGAAGTTACTTTCAACTGA 978 0.4836 MALEAVVFPQDPFAYGCSKDYLYSLVGVQTPNYGGNFQAAEEEKFLLGIINNNIEHNLHANWDSSSTSVMQNVKEQWDSHSSSPEACTVDQSMTAPFPPPSSSVEAATTTTSRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRTNQPQENVGLNGSTAPFAEFFTFPQYTTRGTTMAQNQEQKQWAVADIEVTMVDSHANLKILSKKQPCQLMKIVVGLQSLRLSILHLNVSTLDDMVLYSISVKVEDGCQLNTVDEIAAAVNQLLRTIQEVTFN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01107 325 MobiDBLite consensus disorder prediction 80 109 - -
Pumo10g01107 325 SMART finulus 136 187 IPR011598 GO:0046983
Pumo10g01107 325 FunFam Basic helix-loop-helix transcription factor 121 196 - -
Pumo10g01107 325 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
Pumo10g01107 325 PANTHER MAX DIMERIZATION, MAD 67 321 - -
Pumo10g01107 325 CDD bHLH_AtFAMA_like 133 196 - -
Pumo10g01107 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Pumo10g01107 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 197 IPR036638 GO:0046983
Pumo10g01107 325 Gene3D - 109 198 IPR036638 GO:0046983
Pumo10g01107 325 MobiDBLite consensus disorder prediction 80 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01107 Pumo-Chr10 14247619 14249437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01107 1 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.746 1.15e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g01107 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01107 - - gmx:100789380 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01107 10 14247619 14249437 Pumo10g01107 10 14247619 14249437 ECH
Pumo9g01394 9 40949218 40952376 Pumo10g01107 10 14247619 14249437 PCT