Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01106 ATGACCACTCTCACACACTCCAATTTCCACCATGGCCTTTCCTCTATTTTTCTTTTCCTTTTCTGTTCTTTTCTCCTCACAGAATTTCCACCGCCGGCCGCCGCGCAGCTACCGAACACGCTGACGCCGCCGCCGCAGGACCGGTTTTCGCGGCTGAAGTTCGACAAATCCATGGCCATCGTTCTGGTGATCCTGGTCGCGGTGTTCTTCATCCTAGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGAAGGATGCGAGGGAGGTTCGACCTCTCGATCTCGATTGCGCGGCGGCAACGCGGTCTGGACCGGGAAGTCATCGAGACGTTCCCGACGTTCGTGTACTCCACGGTGAAGAGCCTCAAGATAGGGCGCGCCACGCTAGAATGCGCCGTGTGCCTGAACGAGTTCGAGGAGGACGAAACGCTGCGTTTGATCCCCAAGTGCAGCCACGTGTTCCACCACGAGTGCATCGACGCGTGGCTCGCTAATCACTCCACTTGCCCCGTGTGCCGGGCCAACCTCGTTCCTAAACCCGATGACCCGTCTTTTGTCCCCATCCAAATCCCGGATCCGGAACAACCCGTTTTAACCTCACCGACCCGACCCGAAACTGTGGATTCTCATCCTCATTCTCCGAAGGTTAATAATAATGATGATTTGATTAATCAGATTCAGAACCGTACGCTTACGCAGCGGTCAAGGTCAACGGGTTTTAGAATCGCGAGTTGGTTTCCGCGGTCTAACTCGACGGGGCACTCGCTGGTTCAACCCGGGGAGAATTGTGAGCGGTTTACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTTATGCTGAGTCGCACCAAGAGTTGCGGCGTGAGCGTGACGTTCACGCGCGAGAATAGTGAGAGGAGGGGTTATAGAACAAGGAGCGTTGGTAGCAGCCTCAGCCCTCACGTGAGGGGTTACGGGACAAGGAGCGTGGATGGCACTAGCAGCAGCAGCAGCAGCTCGCACGTGAGGGGGTGGTTTTCTGGTACCCGCTCAGTGAAGGAATCGATTAAGGATGATGTCGGGGAACGATCTTCGAATCGGTTATTCTCGAGGACGACAAGGGAAAGTGAGGTTTAG 1119 0.5621 MTTLTHSNFHHGLSSIFLFLFCSFLLTEFPPPAAAQLPNTLTPPPQDRFSRLKFDKSMAIVLVILVAVFFILGFLSVYTRQCAERRMRGRFDLSISIARRQRGLDREVIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEDETLRLIPKCSHVFHHECIDAWLANHSTCPVCRANLVPKPDDPSFVPIQIPDPEQPVLTSPTRPETVDSHPHSPKVNNNDDLINQIQNRTLTQRSRSTGFRIASWFPRSNSTGHSLVQPGENCERFTLRLPEEVRNQLMLSRTKSCGVSVTFTRENSERRGYRTRSVGSSLSPHVRGYGTRSVDGTSSSSSSSHVRGWFSGTRSVKESIKDDVGERSSNRLFSRTTRESEV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01106 372 MobiDBLite consensus disorder prediction 193 221 - -
Pumo10g01106 372 MobiDBLite consensus disorder prediction 196 221 - -
Pumo10g01106 372 SUPERFAMILY RING/U-box 126 182 - -
Pumo10g01106 372 FunFam E3 ubiquitin-protein ligase ATL6 93 180 - -
Pumo10g01106 372 MobiDBLite consensus disorder prediction 304 340 - -
Pumo10g01106 372 PANTHER RING FINGER DOMAIN-CONTAINING 40 183 - -
Pumo10g01106 372 Pfam Ring finger domain 131 174 IPR001841 -
Pumo10g01106 372 SMART ring_2 132 173 IPR001841 -
Pumo10g01106 372 MobiDBLite consensus disorder prediction 300 372 - -
Pumo10g01106 372 CDD RING-H2_EL5-like 131 174 - -
Pumo10g01106 372 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pumo10g01106 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 179 IPR013083 -
Pumo10g01106 372 MobiDBLite consensus disorder prediction 346 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01106 Pumo-Chr10 14225008 14226912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01106 1 302 Rapid Response to Elicitors AT3G05200 38.957 2.09e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01106 K10664 - gmx:100805815 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01106 10 14225008 14226912 Pumo10g01106 10 14225008 14226912 ECH
Pumo9g01395 9 40967385 40968572 Pumo10g01106 10 14225008 14226912 PCT