Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01084 ATGGCGACCGTGAATCCGCAGCCTCTGCAGTTCGAGGACCCTGCGATACCCGTGGATGACGACGACGATAACGGTGGTGATGATGCTATGGATGAGTTGGAGGATGCCAATGTAAATTCAGTGAACCTTGCTAATGCTGCGAGTGCGACTCATGAAGCGGTGGTTGCTATGCCTTCCAGAGCTAGCGAGCTCTCTCTTTCGTTTGAGGGTGAGGTTTATGTCTTTCCCGCTGTCACTCCTCAGAAGGTGCAAGCCGTCTTGCTGCTTTTGGGAGGACGTGATGTGCCCGCAGGTGTGCCTGCAGTTGAACTACCATTTGATCAAAGTAACAGGGGCATGGGCGATACTCCAAAGCGTTCAAACCTTTCACGGAGAATAGCATCCTTGGTCAGGTTCCGTGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTCGGTATTCCGTGAGAAAAGAGGTGGCACAGAGGATGCATCGGAAAAATGGGCAGTTTGCATCATTGAAGGAAAGCCCAGGTTCATCTAATTGGGATTCTGCACAGAGTTCTGGTCAAGATGGCATTTCTAATTCTGAATCTGTACATAGATGTCACCATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTTAGTAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTACTTCTGTTCTTGAAGGGGAATTGCTGAGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCTTCGAAGTCCAATGCAGCTGATGGTTCTAGTAATCATGCTGTAAACCCCAGTGATGAGGAATTGCCAGAAACTGCAGAACACTTTACGAGTGCTCTGCCACTGGGAATTGGTCATTCGTCAACAGATGACAATGAACAGGAACCTCTGGTCGAGCTAGCTAATCCTTCAGATACAGATATTGACATTCCAGGAAACTTTGATTAG 1041 0.4755 MATVNPQPLQFEDPAIPVDDDDDNGGDDAMDELEDANVNSVNLANAASATHEAVVAMPSRASELSLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVPAGVPAVELPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSAQSSGQDGISNSESVHRCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELLSIHDEQGSSEDPSKSNAADGSSNHAVNPSDEELPETAEHFTSALPLGIGHSSTDDNEQEPLVELANPSDTDIDIPGNFD 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01084 346 ProSiteProfiles Tify domain profile. 57 92 IPR010399 -
Pumo10g01084 346 ProSiteProfiles CCT domain profile. 125 167 IPR010402 GO:0005515
Pumo10g01084 346 MobiDBLite consensus disorder prediction 158 192 - -
Pumo10g01084 346 MobiDBLite consensus disorder prediction 166 190 - -
Pumo10g01084 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 240 - -
Pumo10g01084 346 MobiDBLite consensus disorder prediction 1 31 - -
Pumo10g01084 346 CDD ZnF_GATA 195 239 IPR000679 GO:0006355|GO:0043565
Pumo10g01084 346 SMART tify_2 57 92 IPR010399 -
Pumo10g01084 346 MobiDBLite consensus disorder prediction 15 31 - -
Pumo10g01084 346 Gene3D - 190 243 IPR013088 GO:0006355|GO:0008270
Pumo10g01084 346 MobiDBLite consensus disorder prediction 271 346 - -
Pumo10g01084 346 Pfam tify domain 59 91 IPR010399 -
Pumo10g01084 346 Pfam CCT motif 125 166 IPR010402 GO:0005515
Pumo10g01084 346 SMART GATA_3 190 243 IPR000679 GO:0006355|GO:0043565
Pumo10g01084 346 MobiDBLite consensus disorder prediction 278 296 - -
Pumo10g01084 346 PANTHER GATA TRANSCRIPTION FACTOR 28 19 339 IPR045280 GO:0006355
Pumo10g01084 346 Pfam GATA zinc finger 196 232 IPR000679 GO:0006355|GO:0043565
Pumo10g01084 346 ProSitePatterns GATA-type zinc finger domain. 196 223 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01084 Pumo-Chr10 13982091 13987454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01084 5 238 Tify Gene Family AT1G51600 50.198 1.05e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo10g01084 CCT 1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01084 - - gmx:100801328 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01084 10 13982091 13987454 Pumo10g01084 10 13982091 13987454 ECH