Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01083 ATGTACGGCCCCATGAACCAGATCGAAGACACCGACGGCACCACCTCCGACCACCACATTCATTACAGTTCCCATACCATCGAAGACGGCGGCGCCGCCGTCGAAGACGTTTCCGCCGACTCCGTCTACGTTCCGCCCCCTGAAATCTCTATCCACGATTCTAGCCAGCTCACGCTCTCGTTTCGCGGCCAAGTCTATGTCTTCGACGCCGTTACACCTGATAAGGTTCAAGCAGTGTTGTTGCTGTTGGGTGGAAGTGAACTAACTTCGGGTTCGCAATGTGCGGAGATATCATCTCAAAATCAGGGGGGTGCGGCGGACTATCCTGCAAAATGTAGCTTACCACAGCGAGAGGCGTCATTAAGTAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGCGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCAAAGAATCAAGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAATCAGAAACCTCGTGCACACATTGTGGAATAAGTTCAAAAGGCACTCCAATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAGGAACACTCTCTTGCACCACCTGAGCAGGTTGATGAGGGTAGTAACAATGACTTGGACTGTCGGAGTGCCATCCCCGCACAACATAACAATCTTGTTAATGATAACAATGCTTTGGTATCTGATCGTTGA 819 0.4908 MYGPMNQIEDTDGTTSDHHIHYSSHTIEDGGAAVEDVSADSVYVPPPEISIHDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTSGSQCAEISSQNQGGAADYPAKCSLPQREASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKNQDGTNSWGSDQESGQDAVQSETSCTHCGISSKGTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLAPPEQVDEGSNNDLDCRSAIPAQHNNLVNDNNALVSDR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01083 272 ProSiteProfiles CCT domain profile. 117 159 IPR010402 GO:0005515
Pumo10g01083 272 Pfam tify domain 54 84 IPR010399 -
Pumo10g01083 272 CDD ZnF_GATA 184 230 IPR000679 GO:0006355|GO:0043565
Pumo10g01083 272 SMART GATA_3 179 232 IPR000679 GO:0006355|GO:0043565
Pumo10g01083 272 MobiDBLite consensus disorder prediction 152 180 - -
Pumo10g01083 272 Pfam CCT motif 117 159 IPR010402 GO:0005515
Pumo10g01083 272 PANTHER GATA TRANSCRIPTION FACTOR 28 17 249 IPR045280 GO:0006355
Pumo10g01083 272 MobiDBLite consensus disorder prediction 229 248 - -
Pumo10g01083 272 Pfam GATA zinc finger 185 221 IPR000679 GO:0006355|GO:0043565
Pumo10g01083 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 231 - -
Pumo10g01083 272 MobiDBLite consensus disorder prediction 150 180 - -
Pumo10g01083 272 MobiDBLite consensus disorder prediction 1 21 - -
Pumo10g01083 272 Gene3D - 176 234 IPR013088 GO:0006355|GO:0008270
Pumo10g01083 272 SMART tify_2 50 85 IPR010399 -
Pumo10g01083 272 ProSiteProfiles GATA-type zinc finger domain profile. 179 237 IPR000679 GO:0006355|GO:0043565
Pumo10g01083 272 ProSitePatterns GATA-type zinc finger domain. 185 212 IPR000679 GO:0006355|GO:0043565
Pumo10g01083 272 ProSiteProfiles Tify domain profile. 50 85 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01083 Pumo-Chr10 13974915 13979190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01083 46 271 Tify Gene Family AT4G24470 58.607 7.76e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo10g01083 CCT 2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01083 - - gmx:100784789 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01447 9 41899241 41904665 Pumo10g01083 10 13974915 13979190 PCT