Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01079 ATGGGGGGTCCGTTTCCGGTGGAGCAAGGGGATCTCCACAAGCGCTGGAAGTTGGTTAGTAAGAAGCTGAGGAGTTTTCACAAGTGTGTTGTGCTTCCCATTGGTAGCCTGTCTAATGGGCTTTGTAGGCATCGGGCAATTCTTTTTAAGAGATTGGCAGATTACATAGGTTTGCCCTGTCGCATTGCTCGAGGTTGCAAGTATTGTGTTGCAGATCATAGATCCTCTTGCCTAGTCAAAATTAAAGATGACAAACAGCTCTCAAGGGAATATGTGGTTGACCTAGTTGGGGAACCAGGAAATGTCCATGGACCAGATTCCTCAATTAATGGAGCATATGTTTCTTCGATGCCTTCCCCATTTCAAATTTCTCACTTAAAAGAATCACAATCACCTTATATGGATGACACAGCAAGTTCTCAATCTATAAGTTCCAATCACAGACCTGTTGAAAATCTTCCATATTCAGGCTGTGGACAGATTGATCAACAAGTTAAAGAAACTGATTTGCTGAAAAGTCACAAGGGCTCCATTTATGTGTCAGTTGATCAAATCTGCGAAGGAACGGAACCATCACTAATTCCTTTTAGTTTAGAAGGGAATGATGAGGAATGTGCAGTTCTTAGTTCGGTTTTGCCTACCATCTATGAAGATGTTTCTAAAACTCTTCATCCAGCCATTGAAGCATCATTACATGAATATCCAACGCTTAGTGAAGATGTAGTACAAGAAACTTCCAACAATGAGATCATTGTAAATGGAAGTTCTGTGGTGAAATGTACTTTCAAGCAATCTATACTTGGTTCATCCAGCCAGTCAGAACTGAAACAGGTAGACAATAGAATTGAAAACCAGGGTTGTTTACCTGCTGCGAATATTACAAGATATGTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATATCATGGGATGATTTACGAATTAAAGAGCGTGTCGGTGCTGGCTCATTCGGGACAGTGTACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAGGAATTCCTGAGAGAGGTTGCAATAATGAAACGAGTTCGCCATCCAAATGTGGTGCTCTTCATGGGGTCTGTTACAAAACGCCCTCATCTATCGATAGTGACAGAGTATTTGCCTAGGGGTAGTCTATACCGCCTGATACACAGACCAGCATCTGGTGAAATTCTGGATAAGAGGAGGAGACTACGGATGGCTTTGGACGTGGCTAAAGGGATCAATTATCTCCACTGTTTGAAACCTCCAATTGTGCACTGGGATCTCAAATCCCCAAACTTGTTAGTGGATAAAAATTGGACTGTGAAGGTTTGTGATTTTGGACTGTCCAGATTTAAGGCAAACACTTTCATACCGTCCAAATCTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTTCGCGGTGAACCTTCCAATGAGAAATCTGACGTATTCAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCATGCAACAACCATGGAATGGACTTAGCCCTGCCCAGGTAGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATCTCCCCTGCTTTGGCCTCCCTCATGGAATCTTGTTGGGCCGATGAACCTAGTGAACGCCCATCTTTTGGTAGCATAGTTGAGTCACTAAAGAAGCTGGTAAAATCTCCAGCAGAGGTGATCAAGATGGGGGATACATAG 1758 0.4329 MGGPFPVEQGDLHKRWKLVSKKLRSFHKCVVLPIGSLSNGLCRHRAILFKRLADYIGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSREYVVDLVGEPGNVHGPDSSINGAYVSSMPSPFQISHLKESQSPYMDDTASSQSISSNHRPVENLPYSGCGQIDQQVKETDLLKSHKGSIYVSVDQICEGTEPSLIPFSLEGNDEECAVLSSVLPTIYEDVSKTLHPAIEASLHEYPTLSEDVVQETSNNEIIVNGSSVVKCTFKQSILGSSSQSELKQVDNRIENQGCLPAANITRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGSVTKRPHLSIVTEYLPRGSLYRLIHRPASGEILDKRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVFSFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRRLAIPPNISPALASLMESCWADEPSERPSFGSIVESLKKLVKSPAEVIKMGDT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01079 585 FunFam Serine/threonine-protein kinase isoform 1 305 393 - -
Pumo10g01079 585 Gene3D Transferase(Phosphotransferase) domain 1 394 581 - -
Pumo10g01079 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Pumo10g01079 585 CDD STKc_MAP3K-like 321 569 - -
Pumo10g01079 585 PRINTS Tyrosine kinase catalytic domain signature 430 448 IPR001245 GO:0004672|GO:0006468
Pumo10g01079 585 PRINTS Tyrosine kinase catalytic domain signature 477 487 IPR001245 GO:0004672|GO:0006468
Pumo10g01079 585 PRINTS Tyrosine kinase catalytic domain signature 540 562 IPR001245 GO:0004672|GO:0006468
Pumo10g01079 585 PRINTS Tyrosine kinase catalytic domain signature 496 518 IPR001245 GO:0004672|GO:0006468
Pumo10g01079 585 PRINTS Tyrosine kinase catalytic domain signature 389 402 IPR001245 GO:0004672|GO:0006468
Pumo10g01079 585 ProSitePatterns Protein kinases ATP-binding region signature. 321 342 IPR017441 GO:0005524
Pumo10g01079 585 Pfam Ethylene-responsive protein kinase Le-CTR1 1 102 - -
Pumo10g01079 585 SUPERFAMILY Protein kinase-like (PK-like) 294 568 IPR011009 -
Pumo10g01079 585 SMART serkin_6 315 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01079 585 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 43 574 - -
Pumo10g01079 585 Gene3D Phosphorylase Kinase; domain 1 308 392 - -
Pumo10g01079 585 ProSiteProfiles Protein kinase domain profile. 315 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01079 585 FunFam Serine/threonine-protein kinase CTR1 394 579 - -
Pumo10g01079 585 Pfam Protein tyrosine and serine/threonine kinase 315 569 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01079 Pumo-Chr10 13905970 13912163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01079 1 583 MAP Kinase Kinase Kinase AT4G24480 65.025 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Pumo10g01079 PK_Tyr_Ser-Thr 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01079 - - gmx:100808435 1110.52