Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01072 ATGCCGGAGAAGAAGAATAAGAAAGTCTTCTTCACTGAAGAAGATGCCGTGACGCTCATGCAAAGGTACGACCCAAGTACTGTGTTCACTTTACTTCAGGAAGTGGCGCATTACTCTCAACCGAAGATTGATTGGAGCGAGTTGGTTAAGAAAAGTGCAACTGGGATTTCTAATGCCAGGGAATATCAAATGTTATGGCGGCACTTGGCATATCGGCATTCTTTGCCTGAAAACTTTGAAGATGGGGCTGAACCTTTGGATGATGACAGTGACCTAGAGTGTGAGCTAGAAGCATTACCCCCTGTAAGTGTGGAATGTGCATCAGAGGCTGCTGCATGTGTGAAGGTAATGATTGCTTCTCGAACACTAAGTGAATCTGCCCCTAGTAGCTCAACAATTGAGGCTCCATTGACTATAAATGTTCCAGTTTGCCATTCATCTAGAACTCCTGTTGAAAATTCACAACCCTCTAATTTGATGCAAGGGACAAACATTATTTTTCCAGTTACCGTTCAGAGACAGACACTGCCAACTACATCATCGACAGATGGTATAGAAACCAAGGGATTAGTTGGTGGTAACATGGCTTCCAAAAGAAGAAGAAAGACATGGTCAGAAGAAGAGGACATGCAGCTACGAGCTGCTGTTCAGAGATGTGGTGAAGGGAATTGGGCAACTATGGCAAAAGGAGACAACTTTCCTATTAAGAGAAGTGCTACACAGTTGGCTCAGAGGTGGAGCATTTTACGAAAGAAAGATGGTAGTACCAATTCAGGAACCATCTCAACCAGTACACAGTATACTACTGCTGAACAGCTGGCAACTCGTCACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTGGAATGATGGATGTTAAGCCATCCACATCAGTTAAAAATCAAGTGCAGATTAGAAATGCTACAGAAAAGGTTGCCACTAGTTTTGTACCACCTCAGCAAGTTTTGTTGGGATCTTCTGATTCTCATGCAAAATCCAACTTAGCAGATGAAAAACCAGTCTTGAAGGGTAATCTAATTTCAGACCCTGCGGTAAAATCTACCACAGCAACTTCAGGGACGCGAATTGATCCCCTTTCAAATACTATATCTCAGATTAAAGTTGCTCAAGTAAAAAATGCTGTGGATACCAAGCCTGCAGTTAGCTCTCTGATAAAGCCATCCATTTCTACCAATTTGCCTTCTGACCCAAAGAACAAACATGTTACCCCTTTGGCTGATAAAGGTGGTCAAGTAAAAAATGCTGTGGATACTAAGCCTACAGTTAGCTCTTTGACAAAGCCATCCATTTCTACCAATTTGCCGTCTGATTCAAAGAACAAACATGTTACCCCTTTGCCCGATAAAGTTCCATTGAAGCAAGATGTTAATCCTACAAAAGAGTTGAGGGGTTCTGACCCCAGTACCACACCAAAAGAGAAGGTTCAAGAAAATGAGCCTCCTAAAGTTACTACTGGAAGCCAGATTGATAGCAACCCAGAGAAGGGAAGATTAGATAAAGGTCAAGAGACAAGCACATCTCTTGTTAAAATTACTGGTGGTGTGGAAATTTCAAAAGATAAAGCAAATACAGTAGCGTGTGAAGAGCAAGGAAGCGTTAAGAATGCCAATGCCACCGAGAATAGCAACATTGACAAGGGGAGTCAAAATTTAGATCAAGACAAGAAGATAAATTCAATTGATCAAAATTCAAATAACAAAACGTGA 1740 0.4149 MPEKKNKKVFFTEEDAVTLMQRYDPSTVFTLLQEVAHYSQPKIDWSELVKKSATGISNAREYQMLWRHLAYRHSLPENFEDGAEPLDDDSDLECELEALPPVSVECASEAAACVKVMIASRTLSESAPSSSTIEAPLTINVPVCHSSRTPVENSQPSNLMQGTNIIFPVTVQRQTLPTTSSTDGIETKGLVGGNMASKRRRKTWSEEEDMQLRAAVQRCGEGNWATMAKGDNFPIKRSATQLAQRWSILRKKDGSTNSGTISTSTQYTTAEQLATRHSLSLALDMPFKKLTAGMMDVKPSTSVKNQVQIRNATEKVATSFVPPQQVLLGSSDSHAKSNLADEKPVLKGNLISDPAVKSTTATSGTRIDPLSNTISQIKVAQVKNAVDTKPAVSSLIKPSISTNLPSDPKNKHVTPLADKGGQVKNAVDTKPTVSSLTKPSISTNLPSDSKNKHVTPLPDKVPLKQDVNPTKELRGSDPSTTPKEKVQENEPPKVTTGSQIDSNPEKGRLDKGQETSTSLVKITGGVEISKDKANTVACEEQGSVKNANATENSNIDKGSQNLDQDKKINSIDQNSNNKT 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01072 579 MobiDBLite consensus disorder prediction 453 490 - -
Pumo10g01072 579 MobiDBLite consensus disorder prediction 539 579 - -
Pumo10g01072 579 SUPERFAMILY Homeodomain-like 199 252 IPR009057 -
Pumo10g01072 579 SMART sant 200 252 IPR001005 -
Pumo10g01072 579 CDD SANT_TRF 202 251 - -
Pumo10g01072 579 Pfam Myb-like DNA-binding domain 201 246 IPR001005 -
Pumo10g01072 579 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 577 - -
Pumo10g01072 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 254 IPR017930 -
Pumo10g01072 579 MobiDBLite consensus disorder prediction 178 206 - -
Pumo10g01072 579 MobiDBLite consensus disorder prediction 427 451 - -
Pumo10g01072 579 MobiDBLite consensus disorder prediction 398 579 - -
Pumo10g01072 579 Gene3D - 194 256 - -
Pumo10g01072 579 ProSiteProfiles Myb-like domain profile. 196 250 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01072 Pumo-Chr10 13835397 13843259 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo10g01072 Myb_DNA-binding 4.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01072 - - gmx:100799956 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01072 10 13835397 13843259 Pumo10g01072 10 13835397 13843259 ECH
Pumo9g01436 9 41765307 41770382 Pumo10g01072 10 13835397 13843259 PCT