Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01066 ATGAAAGAGGTTTGCCAAACTCATTGTGGTGAGTTACAAATGAACTTTAAAGTAGGAGTGAGTGCATGTAATGAATGGACAAGAAACAAACAGGACTACCGTTCAGGATTGAGACAAAATCTTCAAAGCAGAAAAGGCCAAAATATAAACTATAGAGGAAAGACAAATTCTAAGATGCCTCATTTCCTTCTCCATGTGCCTTTGTGGAAACTTCCCCTTCCTTCCACAACGGAAGTTTTTTCTGCACTTTCATTTTCATCTAGGACAGAGAGAGGGCTTGGAGAGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCCTTTCTGTTAATATGTTGAAAGCTTCTTTTGTCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGACAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGGCATAGTGCATCCATGATGGCCTATTCTGATTGTGAGGAAGAGGATGTCATTCCAATGAATAATGTGGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATCAAGGAGGAGATTAAAAGGCTAAAGGCTGAAAACCCTAACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCAAACTCAGTGGTGCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAAGTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCTGAGGTCAATGAAGAAGAAGGTCAAGGTTTCCGTGGAAGAAAGGTCCCAAGGAATTCCATCTTGGAAAGGACATAG 849 0.4299 MKEVCQTHCGELQMNFKVGVSACNEWTRNKQDYRSGLRQNLQSRKGQNINYRGKTNSKMPHFLLHVPLWKLPLPSTTEVFSALSFSSRTERGLGEVSVPCSSLSMVVTVRCGHCTSLLSVNMLKASFVPFHLLASLSHLETKESSPEEDANKTLNRHSASMMAYSDCEEEDVIPMNNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPNMAHKEAFSTAAKNWANFPQTQWCKGDEESCSQTDQVVDLDSQVDPPDAEVNEEEGQGFRGRKVPRNSILERT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01066 282 MobiDBLite consensus disorder prediction 250 282 - -
Pumo10g01066 282 Pfam YABBY protein 96 231 IPR006780 GO:0007275
Pumo10g01066 282 PANTHER PROTEIN YABBY 6-RELATED 96 239 IPR006780 GO:0007275
Pumo10g01066 282 MobiDBLite consensus disorder prediction 262 282 - -
Pumo10g01066 282 FunFam Axial regulator YABBY 4 175 243 - -
Pumo10g01066 282 Gene3D High mobility group box domain 178 237 IPR036910 -
Pumo10g01066 282 SUPERFAMILY HMG-box 177 230 IPR036910 -
Pumo10g01066 282 CDD HMG-box_SF 188 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01066 Pumo-Chr10 13793293 13797042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01066 96 278 C2C2-YABBY Transcription Factor Family AT1G23420 55.612 1.22e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo10g01066 YABBY 3.1e-50 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01066 K25796 - gmx:100804172 342.813