Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01060 ATGGGCGAGAAGCTCCTGCAGAGCCGCGATCTGAACGGCTCACGCGACTTCGCCATTCTCGCGCAGGAAGCCGAGCCGCTCCTCGAGGGCTCCGACCAGATCCTCGCCATCGTCGAAGTCCTCCTCGCCGCGGAGAAACCAATCAACAACGACCACCTGGATTGGTACGCTATTCTCCAAATCGATCGCACGTGCCAAGACCTCGATCTGATAAAAAAACAGTACCGTAGGCTCGGCCTTCTCCTTCACCCTGACAAGAACCCTTTCTCCCTCGCCGACCACGCTTTCAAGCTCGTCTCCGATGCCTGGGCCGTTTTATCGGACCCGGTCCAGAAATCGGTTTACGACAGGGACGTGGCCGGTTTCGGTCGAACCGGCGAGTTTCTGGACCGCGTGTCCGTACTGTTATTTTCTCTACGAGTACCCTGTGGTTTGCGAGGGGTGCTGCCTGAGGTGCCAGAATTGCGAGAGGTCGTTCCACGGGCTTTCGATTCAGTCGCTGCCGCCGCTCGTCCCGGGTCAGGAGGCCTATTATTGTAA 540 0.5833 MGEKLLQSRDLNGSRDFAILAQEAEPLLEGSDQILAIVEVLLAAEKPINNDHLDWYAILQIDRTCQDLDLIKKQYRRLGLLLHPDKNPFSLADHAFKLVSDAWAVLSDPVQKSVYDRDVAGFGRTGEFLDRVSVLLFSLRVPCGLRGVLPEVPELREVVPRAFDSVAAAARPGSGGLLL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01060 179 Gene3D DnaJ domain 42 126 IPR036869 -
Pumo10g01060 179 SMART dnaj_3 53 111 IPR001623 -
Pumo10g01060 179 CDD DnaJ 54 108 IPR001623 -
Pumo10g01060 179 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 120 - -
Pumo10g01060 179 Pfam DnaJ domain 54 116 IPR001623 -
Pumo10g01060 179 ProSiteProfiles dnaJ domain profile. 54 119 IPR001623 -
Pumo10g01060 179 PRINTS DnaJ domain signature 75 90 IPR001623 -
Pumo10g01060 179 PRINTS DnaJ domain signature 91 111 IPR001623 -
Pumo10g01060 179 PRINTS DnaJ domain signature 56 74 IPR001623 -
Pumo10g01060 179 SUPERFAMILY Chaperone J-domain 48 119 IPR036869 -
Pumo10g01060 179 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01060 Pumo-Chr10 13734445 13736946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01060 1 119 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 63.710 6.58e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01060 - - gmx:100802055 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01060 10 13734445 13736946 Pumo10g01060 10 13734445 13736946 ECH
Pumo9g01429 9 41680488 41682784 Pumo10g01060 10 13734445 13736946 PCT