Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01059 ATGACGAGGGCGAAGATCAAGATAAAGAAAATTGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGAGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGCCTCGTCGTTTTCTCATCCACCGGGAAGCTCTTTGATTATAGCAGCTCCAGGTTGATGGAGTCAGAAGTAAAGCTTGACTCGTACATACGTAGTTTGTGGTTAATTAAGGCTTAA 246 0.4431 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLVVFSSTGKLFDYSSSRLMESEVKLDSYIRSLWLIKA 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01059 81 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo10g01059 81 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo10g01059 81 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 72 - -
Pumo10g01059 81 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo10g01059 81 SUPERFAMILY SRF-like 2 65 IPR036879 GO:0003677|GO:0046983
Pumo10g01059 81 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo10g01059 81 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Pumo10g01059 81 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo10g01059 81 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo10g01059 81 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01059 Pumo-Chr10 13722928 13724174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01059 1 62 MADS-box Gene Family AT4G24540 79.032 1.78e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo10g01059 SRF-TF 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01059 - - gmx:100776749 115.546